YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|98960971, gi|...
Organism: Arabidopsis thaliana
Length: 405 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|98960971, gi|....

Description E-value Query
Range
Subject
Range
gi|110738346 - gi|110738346|dbj|BAF01100.1| hypothetical protein [Arabidopsis thaliana]
609.0 [0..1] [405..1]
gi|89257633 - gi|89257633|gb|ABD65121.1| hypothetical protein 31.t00035 [Brassica oleracea]
534.0 [0..3] [404..4]
gi|92872877 - gi|92872877|gb|ABE81412.1| tRNA-binding arm; Pleckstrin homology-type [Medicago truncatula]
463.0 [0..2] [394..7]

Back

Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL  60
   61 STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV AGKIMNSVGT RRAGTLSKWF 120
  121 HHNKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [126-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSTSSTTTNL KKKDKVRVEN AHVHSAVSIA ALAAGLASVT SASNCKGSGS KMALALASAT  60
   61 ELLASHCVEM AERAGADHAR VTSTVRSSVD IHSPGDLMTL TAAAATALRG EAALKARQPK 120
  121 EARKNAAITP FERSFSDSHW HANFQYRLEE PNL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [279-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFEGELMQCA RNGVQRTKRV CVYINKKSQV MIKLKSKHVG GAFSKKIKCV VYGVCDEKSA  60
   61 WPYRKERENS EEVYFGLKTG QGLLEFKCKS KIHKQRWVDG VQSLLRQVNC FEAAKCSLGS 120
  121 LNLTGHT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 68.744727
Match: PF08458.1
Description: No description for PF08458.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle