| Protein: | dop-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 607 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dop-3.
| Description | E-value | Query Range |
Subject Range |
|
|
284.0 | [0..1] | [607..1] |
|
Region A: Residues: [1-346] |
1 11 21 31 41 51
| | | | | |
1 MLAGQHHVTD IESPLMVVLW RVAAGVFLPL VPTMAVFGNV LVIMSVFRER SLQTVTNMLI 60
61 VSLAVSDFMV AIGVMSFGVY YEWNDFKWGL GSFFCHVYQA LDVACSTASI LNLLAISLDR 120
121 YIAIGHPISY AQYGARGGRA MISITIVWGV SVAVALPLLL GVNPMEENDL QECELANPYF 180
181 NMISSIFSFF IPCIAMIILY TIIFRRLRQR ERARSLRQAQ RSENDKISSA LLGGAQIARQ 240
241 MGKHFKNRTD QILLEISFQT SSFPTMSESS EDASTISPMI NSFNNFLPKK TPYPSTSIPA 300
301 IPECGSMPNL TIIERPEAEK EKEISIMDLR DTVEMLDDKY SSAILT
|
| Detection Method: |  |
| Confidence: | 39.30103 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [347-607] |
1 11 21 31 41 51
| | | | | |
1 SFQTSRSFGE ELEEILPFID GSNSVKHSRE QLHTTRSNTS TTRLLDVKPE LRSISVPSIQ 60
61 DEKKLSQKSN DLPFSHQNGT HKQKLLPNPG ILMKSKSTTL LKTNGYMDTD SLNRNSHKKS 120
121 LADLLANDEF SFSDSMRVYK NRLFKSLSRA TSGWNKPRPS RHMVKKATKQ MRREHKATVT 180
181 LAVVLAVFLF CWLPFFVLHL SNSICLIIDE NSACVGFLPL YLATWLGYLN SSLNPLIYTV 240
241 FDQRFRNAFR NILSCGIFKK R
|
| Detection Method: | |
| Confidence: | 5.23 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
