YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47104063, gi\|...
Organism:	Photobacterium profundum SS9
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47104063, gi|....

Description	E-value	Query Range	Subject Range
YGCK_ECOLI - Hypothetical protein ygcK - Escherichia coli gi\|89109546, gi\|... - gi\|89109546\|ref\|AP_003326.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG13118 - CRISP RNA (crRNA) containing Cascade antiviral complex protein / CRISPR RNA (crRNA) containing Casca... gi\|169890169, gi... - gi\|170082334\|ref\|YP_001731654.1\| hypothetical protein ECDH10B_2927 [Escherichia coli str. K-12 subst... gi\|238862912, gi... - gi\|238901896\|ref\|YP_002927692.1\| hypothetical protein BWG_2495 [Escherichia coli BW2952], gi\|2388629... EG13118 - CRISP RNA (crRNA) containing Cascade antiviral complex protein / CRISPR RNA (crRNA) containing Casca...	197.0	[0..3]	[134..8]
gi\|39996488, gi\|... - gi\|39996488\|ref\|NP_952439.1\| hypothetical protein GSU1386 [Geobacter sulfurreducens PCA], gi\|3998336...	196.0	[0..2]	[134..7]
gi\|106763639, gi... - gi\|119945305\|ref\|YP_942985.1\| hypothetical protein Ping_1588 [Psychromonas ingrahamii 37], gi\|119863...	166.0	[0..1]	[138..1]
gi\|882652\|gb\|AAA... - ORF_f131 gi\|882652 - gi\|882652\|gb\|AAA69269.1\| ORF_f131	159.0	[0..3]	[108..8]
gi\|222831902, gi... - gi\|224172292\|ref\|XP_002339633.1\| predicted protein [Populus trichocarpa], gi\|222831902\|gb\|EEE70379.1... gi\|67981952, gi\|... - gi\|95930839\|ref\|ZP_01313570.1\| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684], ...	154.0	[0..2]	[138..7]
gi\|88602660, gi\|... - gi\|88602660\|ref\|YP_502838.1\| hypothetical protein Mhun_1379 [Methanospirillum hungatei JF-1], gi\|881...	48.0	[0..14]	[133..28]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQQIYQAYC RLPKGDQADL KRCNLSKLAD SSAYFRVLKF SGTNDNKQTQ RILYLMVAID  60
   61 LTQEEDGSSV AIALLKAGVN ENQIQQIIRS GDNGIEYLKR QLVRCKNIQL KSLGKLAQYW 120
  121 GENTRRQLLK EYILADQD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.886057
Match:	PF09485.1
Description:	No description for PF09485.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.616	N/A	N/A	a.118.26	Description not found.
View	Download	0.364	N/A	N/A	a.118.26	Description not found.
View	Download	0.358	N/A	N/A	d.2.1	Lysozyme-like
View	Download	0.346	N/A	N/A	a.69.1	C-terminal domain of alpha and beta subunits of F1 ATP synthase
View	Download	0.304	N/A	N/A	a.136.1	Repressor of bacterial conjugation FinO
View	Download	0.304	N/A	N/A	a.136.1	Repressor of bacterial conjugation FinO
View	Download	0.296	N/A	N/A	c.10.2	L domain-like
View	Download	0.291	N/A	N/A	d.87.1	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
View	Download	0.291	N/A	N/A	d.87.1	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
View	Download	0.287	N/A	N/A	a.77.1	DEATH domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits