YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15644629
Organism:	Thermotoga maritima MSB8
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15644629.

Description	E-value	Query Range	Subject Range
gi\|85690505, gi\|... - gi\|85708971\|ref\|ZP_01040037.1\| SsrA-binding protein [Erythrobacter sp. NAP1], gi\|85690505\|gb\|EAQ3050...	236.0	[0..3]	[155..29]
SSRP_CAUCN - SsrA-binding protein OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=smpB PE=1 SV=1 SSRP_CAUCR - SsrA-binding protein OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=smpB PE=3 SV=1 SSRP_CAUCR - SsrA-binding protein OS=Caulobacter crescentus GN=smpB PE=3 SV=1	235.0	[0..9]	[158..1]
SSRP_ANAVT - SsrA-binding protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=smpB PE=3 SV=1	235.0	[0..3]	[157..1]
gi\|25317491 - pir\|\|AF2439 tmRNA-binding protein [imported] - Nostoc sp. (strain PCC 7120) SSRP_NOSS1 - SsrA-binding protein OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=smpB PE=3 SV=1	235.0	[0..3]	[157..1]
gi\|48836910 - ref\|ZP_00293905.1\| COG0691: tmRNA-binding protein [Thermobifida fusca] SSRP_THEFY - SsrA-binding protein OS=Thermobifida fusca (strain YX) GN=smpB PE=3 SV=1	235.0	[0..2]	[158..5]
SSRP_NOSP7 - SsrA-binding protein OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=smpB PE=3 SV=1	234.0	[0..3]	[157..1]
SSRP_SYMTH - SsrA-binding protein OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=smpB PE=3 SV=1 SSRP_SYMTH - SsrA-binding protein OS=Symbiobacterium thermophilum GN=smpB PE=3 SV=1	232.0	[0..3]	[157..1]
gi\|3211758 - gi\|3211758\|gb\|AAC23745.1\| VacB homolog [Streptococcus pneumoniae]	232.0	[0..6]	[155..3]
gi\|10176176, gi\|... - gi\|15616114\|ref\|NP_244419.1\| SsrA-binding protein [Bacillus halodurans C-125], gi\|10176176\|dbj\|BAB07... gi\|25317451 - gi\|25317451\|pir\|\|H84093 small protein B BH3552 [imported] - Bacillus halodurans (strain C-125)	230.0	[0..1]	[155..1]
SSRP_BACCN - SsrA-binding protein OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) G...	230.0	[0..7]	[155..3]

Back

Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSGWGEMV KVVATNKKAY TDYEILETYE AGIVLTGTEV KSLRNGSVNF KDSFCRFKNG  60
   61 ELYLLNLHIP PYSHGGVYNH DPERPRKLLL HKRELKRLMG KVQEEGVTIV PLKIYFNDRG 120
  121 IAKVEIAVAR GKKKYDKREA IKKREMERKI REYMKYSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.221849
Match:	1j1hA
Description:	Small protein B (SmpB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	3.32492468545684	bayes_pls_golite062009
binding	2.51918663753466	bayes_pls_golite062009
RNA binding	2.15601096339293	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: