YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4982229, gi\|1...
Organism:	Thermotoga maritima MSB8
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4982229, gi|1....

Description	E-value	Query Range	Subject Range
gi\|1575577 - gi\|1575577\|gb\|AAC44436.1\| DNA-binding response regulator [Thermotoga maritima]	245.0	[0..9]	[247..1]
gi\|114566483, gi... - gi\|114566483\|ref\|YP_753637.1\| response regulator receiver protein [Syntrophomonas wolfei subsp. wolf...	232.0	[0..9]	[242..1]
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	228.0	[0..5]	[243..98]
gi\|77996843, gi\|... - gi\|78044728\|ref\|YP_360866.1\| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-290...	228.0	[0..12]	[243..1]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	227.0	[0..9]	[240..1]
gi\|110801119, gi... - gi\|110801119\|ref\|YP_695076.1\| DNA-binding response regulator [Clostridium perfringens ATCC 13124], g...	224.0	[0..9]	[240..1]
gi\|56910719, gi\|... - gi\|56964476\|ref\|YP_176207.1\| two-component response regulator of alkaline phosphatase synthesis [Bac...	224.0	[0..12]	[247..3]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	223.0	[0..13]	[243..4]
gi\|89203634, gi\|... - gi\|89203634\|ref\|ZP_01182248.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	223.0	[0..9]	[247..1]
gi\|18144301, gi\|... - gi\|18309624\|ref\|NP_561558.1\| DNA-binding response regulator [Clostridium perfringens str. 13], gi\|18...	223.0	[0..9]	[240..1]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPLGGSKMA KKKILVVDDD PAILELVGYN LSKEGYEVLK AYDGEEALKI ANDEDVDMFI  60
   61 VDIMLPGIDG FELVRKIRSM EKYKNTPVIF LSAKGEEFDK VLGLELGADD YITKPFSVRE 120
  121 LLARVKAIFR RLSTATQSKE ERPKKIIAKD LEIDVEKYEV KVRGKKVNLT PLEFELLRFL 180
  181 AENEGKVFSR DVLLDKLWGY DYYGDTRTVD VHIRRLRTKI EEDPSNPKYI ITVRGKGYKF 240
  241 RDPGKED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits