YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15644324, gi\|...
Organism:	Thermotoga maritima MSB8
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15644324, gi|....

Description	E-value	Query Range	Subject Range
gi\|83590353, gi\|... - gi\|83590353\|ref\|YP_430362.1\| hemolysin A [Moorella thermoacetica ATCC 39073], gi\|83573267\|gb\|ABC1981...	253.0	[0..3]	[262..2]
gi\|46135201, gi\|... - gi\|75910708\|ref\|YP_325004.1\| hemolysin A [Anabaena variabilis ATCC 29413], gi\|75704433\|gb\|ABA24109.1...	249.0	[0..3]	[256..2]
gi\|89099258, gi\|... - gi\|89099258\|ref\|ZP_01172136.1\| putative cell adhesion protein (contact hemolysin TlyA-related) [Baci...	243.0	[0..2]	[267..3]
gi\|219539766, gi... - gi\|219669506\|ref\|YP_002459941.1\| hemolysin A [Desulfitobacterium hafniense DCB-2], gi\|219539766\|gb\|A...	240.0	[0..1]	[261..1]
gi\|147677532, gi... - gi\|98662099\|dbj\|GAA00988.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476775...	240.0	[0..1]	[262..1]
gi\|7447262 - pir\|\|S76154 hypothetical protein slr0950 - Synechocystis sp. (strain PCC 6803) gi\|1653500, gi\|1... - gi\|1653500\|dbj\|BAA18413.1\| slr0950 [Synechocystis sp. PCC 6803], gi\|16331005\|ref\|NP_441733.1\| hypoth...	240.0	[0..1]	[247..1]
gi\|78043160, gi\|... - gi\|78043160\|ref\|YP_360803.1\| hemolysin A [Carboxydothermus hydrogenoformans Z-2901], gi\|77995275\|gb\|...	238.0	[0..4]	[264..2]
gi\|10198134, gi\|... - ref\|ZP_00357537.1\| COG1189: Predicted rRNA methylase [Chloroflexus aurantiacus], gi\|10198134\|gb\|AAG... gi\|163670494, gi... - gi\|76258090\|ref\|ZP_00765747.1\| Hemolysin A [Chloroflexus aurantiacus J-10-fl], gi\|76167176\|gb\|EAO612... gi\|222451062, gi... - gi\|222527183\|ref\|YP_002571654.1\| hemolysin A [Chloroflexus sp. Y-400-fl], gi\|222451062\|gb\|ACM55328.1...	238.0	[0..3]	[259..2]
gi\|68170267, gi\|... - gi\|68205777\|ref\|ZP_00557975.1\| Hemolysin A [Desulfitobacterium hafniense DCB-2], gi\|68170267\|gb\|EAM9... gi\|89334541, gi\|... - gi\|89895093\|ref\|YP_518580.1\| hypothetical protein DSY2347 [Desulfitobacterium hafniense Y51], gi\|893...	238.0	[0..4]	[261..10]
gi\|228799208, gi... - gi\|228960444\|ref\|ZP_04122095.1\| hypothetical protein bthur0005_39110 [Bacillus thuringiensis serovar... gi\|29897815, gi\|... - gi\|30022258\|ref\|NP_833889.1\| hemolysin A [Bacillus cereus ATCC 14579], gi\|29897815\|gb\|AAP11090.1\| pu... gi\|229152378, gi... - gi\|229152378\|ref\|ZP_04280570.1\| hypothetical protein bcere0011_39160 [Bacillus cereus m1550], gi\|228... gi\|229129456, gi... - gi\|229129456\|ref\|ZP_04258427.1\| hypothetical protein bcere0015_38990 [Bacillus cereus BDRD-Cer4], gi... gi\|228671786, gi... - gi\|229111651\|ref\|ZP_04241201.1\| hypothetical protein bcere0018_38950 [Bacillus cereus Rock1-15], gi\|... gi\|228723329, gi... - gi\|229047872\|ref\|ZP_04193448.1\| hypothetical protein bcere0027_38470 [Bacillus cereus AH676], gi\|228... gi\|218161357, gi... - gi\|218233400\|ref\|YP_002368979.1\| hemolysin A [Bacillus cereus B4264], gi\|218161357\|gb\|ACK61349.1\| he...	237.0	[0..1]	[267..1]

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Predicted Domain #1

Region A:
Residues: [1-58]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKKRLDQL VLERGLVESR EKAKVLILAG KVLVNGERVT KASKLVPEDA NVELLEEP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.24
Match:	1c05A
Description:	Ribosomal protein S4
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [59-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYVSRGGYKL ESAFESFKID VSGKVACDIG ASTGGFTDFL LQRGAKKVYA VDVGYGQLHW  60
   61 KLRNDPRVVV MEKVNARYLN PDDLGEKVDV VTCDVSFISL KKIIPAISRI LKNIGDAVLL 120
  121 VKPQFEAPRK FVKKGIVKDP GVHLEVLEEI RKSLIENGFV VKGCCFSKIK GTEGNIEYFF 180
  181 WVKKEGENAE IDLRKIVEEA WRFFGERER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.39794
Match:	2v74B
Description:	No description for 2v74B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits