YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4982109, gi\|1...
Organism:	Thermotoga maritima MSB8
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4982109, gi|1....

Description	E-value	Query Range	Subject Range
gi\|89211345, gi\|... - gi\|89211345\|ref\|ZP_01189714.1\| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...	253.0	[0..1]	[261..1]
gi\|189018758, gi... - gi\|189026183\|ref\|YP_001933955.1\| flagellar basal-body rod protein [Treponema pallidum subsp. pallidu... gi\|15639944, gi\|... - gi\|3323281\|gb\|AAC65915.1\| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. palli... gi\|7443084 - pir\|\|C71259 probable flagellar basal-body rod protein (flgG-1) - syphilis spirochete	250.0	[0..1]	[261..1]
gi\|71484066, gi\|... - gi\|71550721\|ref\|ZP_00670810.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078 ...	246.0	[0..1]	[259..1]
gi\|7443088 - pir\|\|C70372 flagellar hook basal body protein flgG - Aquifex aeolicus gi\|15606190, gi\|... - gi\|2983377\|gb\|AAC06963.1\| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5], gi\|15606190...	245.0	[0..1]	[261..1]
gi\|30138210, gi\|... - gi\|30248324\|ref\|NP_840394.1\| flagellar basal body rod protein FlgG [Nitrosomonas europaea ATCC 19718...	245.0	[0..1]	[259..1]
gi\|67677244, gi\|... - gi\|92114096\|ref\|YP_574024.1\| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...	242.0	[0..1]	[259..1]
gi\|82410520, gi\|... - gi\|82702455\|ref\|YP_412021.1\| hypothetical protein Nmul_A1326 [Nitrosospira multiformis ATCC 25196], ...	242.0	[0..1]	[259..1]
gi\|46448340, gi\|... - gi\|46578928\|ref\|YP_009736.1\| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris subsp. vu... gi\|241909539, gi... - gi\|241909539\|ref\|ZP_04794070.1\| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris RCH1],... gi\|120603471, gi... - gi\|120603471\|ref\|YP_967871.1\| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris subsp. v...	242.0	[0..1]	[261..1]
gi\|32262631, gi\|... - gi\|32266580\|ref\|NP_860612.1\| flagellar basal body rod protein FlgG [Helicobacter hepaticus ATCC 5144...	239.0	[0..1]	[261..1]
gi\|94427542, gi\|... - gi\|94500243\|ref\|ZP_01306776.1\| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65], gi\|94...	239.0	[0..1]	[258..1]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMISLYSAAT GMSAQQFKLD TIANNLANVD TTGYKKVRAE FQDLLYQYVK NAGTPTAATS  60
   61 SLPTGLYVGH GVRTAATTRI FTLGNFEQTG NALDLAIAGD GFFQIQLQDG RIAYTRDGSF 120
  121 KMDSEGRIVT SNGLLLVPEI TIPENAVSIN VSPDGIVSAE LQDGTIQELG TITLVRFVNP 180
  181 SGLKSIGDNL YIATPASGDP IEGVPGQDGF GAIKQGFLEK SNVDVVREMV DMITAQRAYE 240
  241 FNSRVIQTAD EMLRTATNVK R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.154902
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits