YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15643897, gi\|...
Organism:	Thermotoga maritima MSB8
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15643897, gi|....

Description	E-value	Query Range	Subject Range
gi\|169347177, gi... - gi\|169347177\|ref\|ZP_02866119.1\| inosine-5'-monophosphate dehydrogenase [Clostridium perfringens C st... gi\|182381122, gi... - gi\|182381122\|gb\|EDT78601.1\| inosine-5'-monophosphate dehydrogenase [Clostridium perfringens NCTC 823... gi\|18311258, gi\|... - gi\|18311258\|ref\|NP_563192.1\| inositol-5-monophosphate dehydrogenase [Clostridium perfringens str. 13... gi\|170715217, gi... - gi\|170715217\|gb\|EDT27399.1\| inosine-5'-monophosphate dehydrogenase [Clostridium perfringens CPE str.... gi\|168211655, gi... - gi\|170710401\|gb\|EDT22583.1\| inosine-5'-monophosphate dehydrogenase [Clostridium perfringens B str. A... gi\|168205104, gi... - gi\|170663361\|gb\|EDT16044.1\| inosine-5'-monophosphate dehydrogenase [Clostridium perfringens E str. J... gi\|110800169, gi... - gi\|110800169\|ref\|YP_696948.1\| inositol-5-monophosphate dehydrogenase [Clostridium perfringens ATCC 1...	143.0	[0..8]	[213..94]
gi\|53796446 - ref\|ZP_00357413.1\| COG0516: IMP dehydrogenase/GMP reductase [Chloroflexus aurantiacus] gi\|163667490, gi... - gi\|76259769\|ref\|ZP_00767414.1\| IMP dehydrogenase [Chloroflexus aurantiacus J-10-fl], gi\|76165345\|gb\|... gi\|222523951, gi... - gi\|222523951\|ref\|YP_002568421.1\| inosine-5'-monophosphate dehydrogenase [Chloroflexus sp. Y-400-fl],...	143.0	[0..7]	[213..98]
gi\|110682767, gi... - gi\|110802266\|ref\|YP_699537.1\| inositol-5-monophosphate dehydrogenase [Clostridium perfringens SM101]...	142.0	[0..8]	[213..94]
gi\|53751422, gi\|... - gi\|54297637\|ref\|YP_124006.1\| hypothetical protein lpp1688 [Legionella pneumophila str. Paris], gi\|53... gi\|52841951, gi\|... - gi\|52841951\|ref\|YP_095750.1\| inosine-5'-monophosphate dehydrogenase [Legionella pneumophila subsp. p...	140.0	[0..7]	[213..94]
IMDH_AQUAE - Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus GN=guaB PE=3 SV=1 IMDH_AQUAE - Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=guaB PE=3 SV=1	140.0	[0..7]	[213..96]
gi\|95133466, gi\|... - gi\|95930426\|ref\|ZP_01313162.1\| inosine-5'-monophosphate dehydrogenase [Desulfuromonas acetoxidans DS...	139.0	[0..7]	[213..94]
gi\|53754443, gi\|... - gi\|54294611\|ref\|YP_127026.1\| hypothetical protein lpl1687 [Legionella pneumophila str. Lens], gi\|537...	139.0	[0..7]	[213..94]
gi\|113725392, gi... - gi\|113874024\|ref\|ZP_01414152.1\| IMP dehydrogenase [Sinorhizobium medicae WSM419], gi\|113725392\|gb\|EA...	138.0	[0..7]	[213..182]
gi\|113941838, gi... - gi\|159897729\|ref\|YP_001543976.1\| inosine-5'-monophosphate dehydrogenase [Herpetosiphon aurantiacus A...	138.0	[0..7]	[213..98]
gi\|48835006 - ref\|ZP_00292008.1\| COG0516: IMP dehydrogenase/GMP reductase [Thermobifida fusca] gi\|72162995, gi\|... - gi\|72162995\|ref\|YP_290652.1\| inosine-5'-monophosphate dehydrogenase [Thermobifida fusca YX], gi\|7191...	136.0	[0..7]	[213..104]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVKDFMTRN PITIAPETSF SEALKLMKQN KIKRLIVMKN EKIVGIVTEK DLLYASPSKA  60
   61 TTLNIWELHY LLSKLKIEEI MTKDVVTVNE NTPIEDAARI MEEKDISGLP VVDDAGRLVG 120
  121 IITQTDIFKV FVEIFGTKRE GTIRYTMEMP DKPGELLEVA KRIYEAGGNI ISIATLFEEG 180
  181 KDSYLATLRV ENIDHEKFVK SLDEIDVKLL YYHSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.30103
Match:	1vrdA
Description:	Crystal structure of Inosine-5'-monophosphate dehydrogenase (TM1347) from THERMOTOGA MARITIMA at 2.18 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits