YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15643439, gi\|...
Organism:	Thermotoga maritima MSB8
Length:	67 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15643439, gi|....

Description	E-value	Query Range	Subject Range
gi\|23113770, gi\|... - gi\|68207712\|ref\|ZP_00559864.1\| Flagellar [Desulfitobacterium hafniense DCB-2], gi\|68168406\|gb\|EAM963... gi\|89895730, gi\|... - gi\|89895730\|ref\|YP_519217.1\| hypothetical protein DSY2984 [Desulfitobacterium hafniense Y51], gi\|893...	97.0	[0..1]	[66..1]
gi\|3323027, gi\|1... - gi\|3323027\|gb\|AAC65691.1\| flagellar protein (flbD) [Treponema pallidum subsp. pallidum str. Nichols]... gi\|7521072 - pir\|\|B71292 probable flagellar protein (flbD) - syphilis spirochete gi\|2196894 - gi\|2196894\|gb\|AAB61252.1\| Orf4 [Treponema pallidum] gi\|189025951, gi... - gi\|189025951\|ref\|YP_001933723.1\| flagellar protein [Treponema pallidum subsp. pallidum SS14], gi\|189...	94.0	[0..1]	[58..1]
gi\|1185052 - gi\|1185052\|gb\|AAB58961.1\| motility protein	94.0	[0..1]	[66..1]
gi\|24216277, gi\|... - gi\|24216277\|ref\|NP_713758.1\| flagellar protein D [Leptospira interrogans serovar Lai str. 56601], gi... gi\|45599754, gi\|... - gi\|45656519\|ref\|YP_000605.1\| flagellar protein [Leptospira interrogans serovar Copenhageni str. Fioc...	92.0	[0..1]	[61..1]
gi\|1399284 - gi\|1399284\|gb\|AAB03249.1\| orf4; initiates with GTG	92.0	[0..1]	[65..1]
gi\|221192325, gi... - gi\|221217648\|ref\|ZP_03589116.1\| conserved domain protein [Borrelia burgdorferi 72a], gi\|221192325\|gb... gi\|223885696, gi... - gi\|223888880\|ref\|ZP_03623471.1\| conserved domain protein [Borrelia burgdorferi 64b], gi\|223885696\|gb... gi\|215981164, gi... - gi\|216264691\|ref\|ZP_03436683.1\| conserved domain protein [Borrelia burgdorferi 156a], gi\|215981164\|g... gi\|218165038, gi... - gi\|218249850\|ref\|YP_002374805.1\| hypothetical protein BbuZS7_0288 [Borrelia burgdorferi ZS7], gi\|218... gi\|195941364 - gi\|195941364\|ref\|ZP_03086746.1\| flagellar protein (flbD) [Borrelia burgdorferi 80a] gi\|226234002, gi... - gi\|226320583\|ref\|ZP_03796143.1\| conserved domain protein [Borrelia burgdorferi 29805], gi\|226234002\|... gi\|225550147, gi... - gi\|225550147\|ref\|ZP_03771107.1\| conserved domain protein [Borrelia burgdorferi 118a], gi\|225369259\|g... gi\|225549049, gi... - gi\|225549049\|ref\|ZP_03770024.1\| conserved domain protein [Borrelia burgdorferi 94a], gi\|225370275\|gb... gi\|15594627, gi\|... - gi\|2688184\|gb\|AAC66666.1\| flagellar protein (flbD) [Borrelia burgdorferi B31], gi\|15594627\|ref\|NP_21... gi\|226321600, gi... - gi\|226321600\|ref\|ZP_03797126.1\| conserved domain protein [Borrelia burgdorferi Bol26], gi\|226232789\|... gi\|7463182 - pir\|\|B70135 flagellar protein (flbD) homolog - Lyme disease spirochete gi\|224511889, gi... - gi\|224533162\|ref\|ZP_03673762.1\| conserved domain protein [Borrelia burgdorferi WI91-23], gi\|22451188... gi\|224513131, gi... - gi\|224533838\|ref\|ZP_03674426.1\| conserved domain protein [Borrelia burgdorferi CA-11.2a], gi\|2245131...	92.0	[0..1]	[66..1]
gi\|52080232, gi\|... - gi\|52785609\|ref\|YP_091438.1\| hypothetical protein BLi01850 [Bacillus licheniformis ATCC 14580], gi\|5...	92.0	[0..1]	[65..1]
gi\|67986433, gi\|... - gi\|69287648\|ref\|ZP_00617979.1\| Flagellar [Kineococcus radiotolerans SRS30216], gi\|67986433\|gb\|EAM742...	91.0	[0..2]	[60..65]
gi\|4426944 - gi\|4426944\|gb\|AAD20618.1\| unknown [Treponema denticola] gi\|41819537, gi\|... - gi\|42528267\|ref\|NP_973365.1\| flagellar protein-related protein [Treponema denticola ATCC 35405], gi\|...	91.0	[0..1]	[65..1]
gi\|116122040, gi... - gi\|116329296\|ref\|YP_799016.1\| endoflagellar protein [Leptospira borgpetersenii serovar Hardjo-bovis ... gi\|116330097, gi... - gi\|116330097\|ref\|YP_799815.1\| endoflagellar protein [Leptospira borgpetersenii serovar Hardjo-bovis ...	90.0	[0..1]	[64..1]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLTRIDGR WFFLNADLIE TVEALPDTTI TLINGKKYIV KESAEEVVQR VIEYKRKIFS  60
   61 WWKEQGR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.853872
Match:	PF06289.2
Description:	No description for PF06289.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.725	N/A	N/A	d.58.49	YajQ-like
View	Download	0.724	N/A	N/A	d.186.1	Head-to-tail joining protein W, gpW
View	Download	0.707	N/A	N/A	d.186.1	Head-to-tail joining protein W, gpW
View	Download	0.671	N/A	N/A	d.58.23	Probable ACP-binding domain of malonyl-CoA ACP transacylase
View	Download	0.667	N/A	N/A	d.58.23	Probable ACP-binding domain of malonyl-CoA ACP transacylase
View	Download	0.658	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.654	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.643	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.640	N/A	N/A	d.58.49	YajQ-like
View	Download	0.634	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits