YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7441335
Organism:	Thermotoga maritima
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7441335.

Description	E-value	Query Range	Subject Range
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	149.0	[0..4]	[145..256]
HS17A_ORYSJ - 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1 HSP23_ORYSA - 17.4 kDa class I heat shock protein 3 - Oryza sativa (Rice) gi\|125543232 - gi\|125543232\|gb\|EAY89371.1\| hypothetical protein OsI_10878 [Oryza sativa Indica Group]	149.0	[0..1]	[145..1]
gi\|41059801 - gi\|41059801\|gb\|AAR99375.1\| small heat shock protein [Prunus persica]	145.0	[0..4]	[145..8]
gi\|11276926, gi\|... - gi\|3928924\|gb\|AAC79726.1\| small heat shock protein [Thermotoga maritima], pir\|\|T46658 small heat sho...	144.0	[0..1]	[147..1]
gi\|224545 - gi\|224545\|prf\|\|1107298A protein,small heat shock	143.0	[0..4]	[145..10]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLGRREDIF RPFRELQREI DRLFDDFFRT EVRPAKEFFA PDMDVYETDD EVVIEVEIPG  60
   61 IDRKDVKITV EENILKISGE KKLEREQKGK NYYYVERSAG KFERAIRLPD YVDVEKIKAE 120
  121 YKNGVLTIRV PKKEERKKKV IEVEVQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits