YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60593842, gi\|...
Organism:	Thermotoga maritima
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60593842, gi|....

Description	E-value	Query Range	Subject Range
gi\|52696234, gi\|... - gi\|52696235\|pdb\|1VLW\|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphogluconate Aldolase4-Hyd...	172.0	[0..1]	[205..13]
gi\|75237636, gi\|... - gi\|75237636\|ref\|ZP_00721656.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|91213377, gi\|... - gi\|91213377\|ref\|YP_543363.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli UTI89... gi\|218692123, gi... - gi\|218692123\|ref\|YP_002400335.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli E... gi\|226903035, gi... - gi\|237702864\|ref\|ZP_04533345.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia sp. 3_2...	159.0	[0..1]	[201..1]
gi\|227888557, gi... - gi\|227888557\|ref\|ZP_04006362.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli 83... gi\|26111027, gi\|... - gi\|26250596\|ref\|NP_756636.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli CFT07...	159.0	[0..1]	[201..1]
gi\|56380333, gi\|... - gi\|56420491\|ref\|YP_147809.1\| 2-dehydro-3-deoxyphosphogluconate aldolase [Geobacillus kaustophilus HT...	158.0	[0..4]	[203..7]
gi\|194438600, gi... - gi\|83585910\|ref\|ZP_00924549.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|253326574, gi... - gi\|254290538\|ref\|YP_003056286.1\| hypothetical protein ECD_03722 [Escherichia coli BL21(DE3)], gi\|253... gi\|251787101, gi... - gi\|251787101\|ref\|YP_003001405.1\| hypothetical protein B21_03671 [Escherichia coli BL21], gi\|24237937... gi\|253975689, gi... - gi\|254163788\|ref\|YP_003046896.1\| putative conserved hypothetical protein [Escherichia coli B str. RE...	158.0	[0..1]	[201..1]
gi\|110644175, gi... - gi\|110644175\|ref\|YP_671905.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli 536]...	157.0	[0..1]	[201..1]
gi\|238913081 - gi\|238913081\|ref\|ZP_04656918.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica... gi\|62129949, gi\|... - gi\|62182316\|ref\|YP_218733.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica su... gi\|168464842, gi... - gi\|195632463\|gb\|EDX50947.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica sub... gi\|167992421, gi... - gi\|205329421\|gb\|EDZ16185.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica sub...	152.0	[0..8]	[203..5]
gi\|168217250, gi... - gi\|182380641\|gb\|EDT78120.1\| khg/kdpg aldolase [Clostridium perfringens NCTC 8239], gi\|168217250\|ref\|... gi\|170715088, gi... - gi\|170715088\|gb\|EDT27270.1\| khg/kdpg aldolase [Clostridium perfringens CPE str. F4969], gi\|168213335... gi\|18309132, gi\|... - gi\|18309132\|ref\|NP_561066.1\| 2-dehydro-3-deoxyphosphogluconate/4-hydroxy-2-ox oglutarate aldolase [C... gi\|168205690, gi... - gi\|170662781\|gb\|EDT15464.1\| khg/kdpg aldolase [Clostridium perfringens E str. JGS1987], gi\|168205690...	152.0	[0..3]	[204..2]
gi\|110647996, gi... - gi\|110834885\|ref\|YP_693744.1\| indole-3-glycerol phosphate synthase [Alcanivorax borkumensis SK2], gi...	152.0	[0..3]	[197..59]
gi\|108563462, gi... - gi\|108563462\|ref\|YP_627778.1\| 2-keto-3-deoxy-6-phosphogluconate aldolase [Helicobacter pylori HPAG1]...	151.0	[0..2]	[199..4]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMEELFKKH KIVAVLRANS VEEAKEKALA VFEGGVHLIE ITFTVPDADT VIKELSFLKE  60
   61 KGAIIGAGTV TSVEQCRKAV ESGAEFIVSP HLDEEISQFC KEKGVFYMPG VMTPTELVKA 120
  121 MKLGHTILKL FPGEVVGPQF VKAMKGPFPN VKFVPTGGVN LDNVCEWFKA GVLAVGVGSA 180
  181 LVKGTPDEVR EKAKAFVEKI RGCTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	1vlwA
Description:	Crystal structure of 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (TM0066) from Thermotoga maritima at 2.30 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.14025337715947	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: