YRC Public Data Repository - Protein Structure Prediction

Protein:	RL10_HAEDU
Organism:	Haemophilus ducreyi 35000HP
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL10_HAEDU.

Description	E-value	Query Range	Subject Range
RL10_ACTSZ - 50S ribosomal protein L10 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplJ PE=3 SV=...	185.0	[0..1]	[163..1]
RL10_MANSM - 50S ribosomal protein L10 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplJ PE=3 SV=1	185.0	[0..1]	[163..1]
RL10_HISS2 - 50S ribosomal protein L10 OS=Histophilus somni (strain 2336) GN=rplJ PE=3 SV=1	184.0	[0..1]	[163..1]
RL10_HAEI8 - 50S ribosomal protein L10 OS=Haemophilus influenzae (strain 86-028NP) GN=rplJ PE=3 SV=1	184.0	[0..1]	[163..1]
gi\|145642230, gi... - gi\|145642230\|ref\|ZP_01797797.1\| 50S ribosomal protein L10 [Haemophilus influenzae R3021], gi\|1456316... gi\|145629686, gi... - gi\|145629686\|ref\|ZP_01785483.1\| 50S ribosomal protein L10 [Haemophilus influenzae 22.1-21], gi\|14497... gi\|229809657, gi... - gi\|229847419\|ref\|ZP_04467519.1\| 50S ribosomal protein L10 [Haemophilus influenzae 7P49H1], gi\|229809... gi\|229845630, gi... - gi\|229845630\|ref\|ZP_04465755.1\| 50S ribosomal protein L10 [Haemophilus influenzae 6P18H1], gi\|229811... gi\|42628926 - gi\|42628926\|ref\|ZP_00154478.1\| COG0244: Ribosomal protein L10 [Haemophilus influenzae R2846] gi\|42630902 - gi\|42630902\|ref\|ZP_00156440.1\| COG0244: Ribosomal protein L10 [Haemophilus influenzae R2866] RL10_HAEIE - 50S ribosomal protein L10 OS=Haemophilus influenzae (strain PittEE) GN=rplJ PE=3 SV=1 gi\|145642230, gi... - gi\|145642230\|ref\|ZP_01797797.1\| 50S ribosomal protein L10 [Haemophilus influenzae R3021], gi\|1449826... gi\|145639388, gi... - gi\|145639388\|ref\|ZP_01794993.1\| 50S ribosomal protein L10 [Haemophilus influenzae PittII], gi\|145271... gi\|145268800, gi... - gi\|145638006\|ref\|ZP_01793641.1\| 50S ribosomal protein L10 [Haemophilus influenzae PittHH], gi\|145268... gi\|145267060, gi... - gi\|145635665\|ref\|ZP_01791361.1\| 50S ribosomal protein L10 [Haemophilus influenzae PittAA], gi\|145267...	184.0	[0..1]	[163..1]
RL10_HAEIN - 50S ribosomal protein L10 OS=Haemophilus influenzae GN=rplJ PE=1 SV=2 RL10_HAEIN - 50S ribosomal protein L10 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=r...	183.0	[0..1]	[163..1]
RL10_ACTP7 - 50S ribosomal protein L10 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplJ PE=3 S... gi\|46143568 - gi\|46143568\|ref\|ZP_00134927.2\| COG0244: Ribosomal protein L10 [Actinobacillus pleuropneumoniae serov... RL10_ACTP2 - 50S ribosomal protein L10 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rplJ PE=3 S...	183.0	[0..1]	[163..1]
RL10_HAES1 - 50S ribosomal protein L10 OS=Haemophilus somnus (strain 129Pt) GN=rplJ PE=3 SV=1	183.0	[0..1]	[163..1]
RL10_PASMU - 50S ribosomal protein L10 OS=Pasteurella multocida (strain Pm70) GN=rplJ PE=3 SV=1 RL10_PASMU - 50S ribosomal protein L10 OS=Pasteurella multocida GN=rplJ PE=3 SV=1	182.0	[0..1]	[163..1]
gi\|85834294, gi\|... - gi\|86147867\|ref\|ZP_01066172.1\| 50S ribosomal protein L10 [Vibrio sp. MED222], gi\|85834294\|gb\|EAQ5244...	179.0	[0..1]	[163..1]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNLQDKQA IVAEVNEAAK GALSAVVADS RGVTVEKMTE LRKSAREAGV TMRVVRNTLL  60
   61 RRAVEGTEFE CLTDTFTGPT LIAFSNEHPG AAARLFTEFA KTNKEFELKG AAFEGKVQNV 120
  121 EFLATLPTYE EAIARLMGTM KEAAAGKLVR TFAALRDKLQ EAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1zavA
Description:	Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.21399440705185	bayes_pls_golite062009
structural molecule activity	8.64272477066313	bayes_pls_golite062009
binding	0.883379158418688	bayes_pls_golite062009
protein binding	0.184314459922274	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: