YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33149043, gi\|...
Organism:	Haemophilus ducreyi 35000HP
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33149043, gi|....

Description	E-value	Query Range	Subject Range
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	156.0	[0..2]	[105..43]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	155.0	[0..2]	[105..43]
gi\|126097342, gi... - gi\|126208550\|ref\|YP_001053775.1\| thioredoxin [Actinobacillus pleuropneumoniae L20], gi\|126097342\|gb\|... gi\|32035159 - gi\|32035159\|ref\|ZP_00135199.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Actinobacillus p... gi\|165976501, gi... - gi\|165976501\|ref\|YP_001652094.1\| thioredoxin [Actinobacillus pleuropneumoniae serovar 3 str. JL03], ... gi\|190150405, gi... - gi\|190150405\|ref\|YP_001968930.1\| thioredoxin [Actinobacillus pleuropneumoniae serovar 7 str. AP76], ...	152.0	[0..1]	[105..1]
gi\|25067747 - gi\|25067747\|gb\|AAN65341.1\| thioredoxin/transketolase fusion protein [synthetic construct]	149.0	[0..2]	[105..5]
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	149.0	[0..2]	[105..6]
gi\|33576644, gi\|... - gi\|33602206\|ref\|NP_889766.1\| thioredoxin 1 [Bordetella bronchiseptica RB50], gi\|33576644\|emb\|CAE3372...	149.0	[0..2]	[105..38]
gi\|33566268 - gi\|33566268\|emb\|CAE37179.1\| thioredoxin 1 [Bordetella parapertussis] gi\|33596499 - gi\|33596499\|ref\|NP_884142.1\| thioredoxin 1 [Bordetella parapertussis 12822] gi\|33592390, gi\|... - gi\|33592390\|ref\|NP_880034.1\| thioredoxin 1 [Bordetella pertussis Tohama I], gi\|33572035\|emb\|CAE41559...	149.0	[0..2]	[105..38]
gi\|575449 - gi\|575449\|gb\|AAA67270.1\| Derived from E. coli thioredoxin gene; normal translation termination codon...	148.0	[0..2]	[105..5]
gi\|25282775 - pir\|\|AD1813 thioredoxin [imported] - Nostoc sp. (strain PCC 7120) gi\|75702591, gi\|... - gi\|75908866\|ref\|YP_323162.1\| thioredoxin [Anabaena variabilis ATCC 29413], gi\|75702591\|gb\|ABA22267.1... gi\|7427614, gi\|1... - gi\|7427614\|pir\|\|TXAI thioredoxin 1 - Anabaena sp, gi\|142118\|gb\|AAA22049.1\| thioredoxin THIO1_NOSSO - Thioredoxin-1 OS=Nostoc sp. (strain ATCC 29151 / PCC 7119) GN=trxA PE=1 SV=2 THIO1_NOSS1 - Thioredoxin-1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trxA PE=3 SV=2	148.0	[0..4]	[105..6]
gi\|148654106, gi... - gi\|91770948\|ref\|ZP_01272767.1\| Thioredoxin [Psychrobacter sp. PRwf-1], gi\|91719962\|gb\|EAS85892.1\| Th...	147.0	[0..1]	[105..4]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHQVTDATF EQEVLKSDLP VLLDFWAPWC GPCRTIAPWL DELAQEFAGR AKVAKVNVDE  60
   61 NQQIAAQFGI RSIPTLLLFK NGEVVAIQVG VLPKSQLVTF IEQAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.30103
Match:	2h71A
Description:	No description for 2h71A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits