YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33152600, gi\|...
Organism:	Haemophilus ducreyi 35000HP
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33152600, gi|....

Description	E-value	Query Range	Subject Range
gi\|241909490, gi... - gi\|241909490\|ref\|ZP_04794026.1\| phage virion morphogenesis protein [Desulfovibrio vulgaris RCH1], gi... gi\|46581112, gi\|... - gi\|46581112\|ref\|YP_011920.1\| virion morphogenesis protein [Desulfovibrio vulgaris subsp. vulgaris st...	166.0	[0..4]	[161..2]
gi\|168826957, gi... - gi\|32029862\|ref\|ZP_00132816.1\| COG5005: Mu-like prophage protein gpG [Haemophilus somnus 2336], gi\|1...	156.0	[0..4]	[159..2]
gi\|11353451, gi\|... - gi\|6900375\|emb\|CAB71987.1\| hypothetical protein [Neisseria meningitidis], pir\|\|D81811 hypothetical p... gi\|218768620, gi... - gi\|7380486\|emb\|CAB85072.1\| hypothetical protein [Neisseria meningitidis Z2491], gi\|218768620\|ref\|YP_...	151.0	[0..4]	[160..2]
SO0669 - prophage MuSo1 G protein, putative gi\|24346184, gi\|... - gi\|24372260\|ref\|NP_716302.1\| prophage MuSo1, virion morphogenesis protein [Shewanella oneidensis MR-...	148.0	[0..1]	[158..1]
VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 /... VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae GN=HI_1568 PE=4 SV=1	145.0	[0..4]	[158..2]
gi\|134295414, gi... - gi\|67545321\|ref\|ZP_00423244.1\| Phage virion morphogenesis (putative tail completion) protein [Burkho...	143.0	[0..4]	[162..3]
gi\|33147940, gi\|... - gi\|33151719\|ref\|NP_873072.1\| mu-like bacteriophage G protein 2 [Haemophilus ducreyi 35000HP], gi\|331...	142.0	[0..4]	[159..2]
gi\|75512140, gi\|... - gi\|75512140\|ref\|ZP_00734712.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli 53638], gi\|18...	141.0	[0..2]	[161..5]
gi\|16502707, gi\|... - gi\|25512946\|pir\|\|AG0686 probable bacteriophage protein STY1618 [imported] - Salmonella enterica subs... gi\|16760412 - gi\|16760412\|ref\|NP_456029.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ser...	140.0	[0..2]	[161..5]
gi\|213855899 - gi\|213855899\|ref\|ZP_03384139.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213610157 - gi\|213610157\|ref\|ZP_03369983.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213648562 - gi\|213648562\|ref\|ZP_03378615.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213427422 - gi\|213427422\|ref\|ZP_03360172.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213581732 - gi\|213581732\|ref\|ZP_03363558.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213024650 - gi\|213024650\|ref\|ZP_03339097.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|29137452, gi\|... - gi\|29141824\|ref\|NP_805166.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ser...	140.0	[0..2]	[161..5]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVKVEINT QQLTTILNKA VQTLANPKAM FGEMGETLLE IHSIRFTQQQ APDGTPWQPL  60
   61 ANWYRDSKKY NQDKILTLHG DLRGTLRYQA DNHGVIFGSD RPYAAIHQFG GTIKPKNKKI 120
  121 LKLGTLYARS IIIPARPWLG ISADNEQRLI EIARNHLENA FNA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	10.283997
Match:	PF05069.4
Description:	No description for PF05069.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits