YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33148567, gi\|...
Organism:	Haemophilus ducreyi 35000HP
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33148567, gi|....

Description	E-value	Query Range	Subject Range
gi\|92115045, gi\|... - gi\|92115045\|ref\|YP_574973.1\| diacylglycerol kinase [Chromohalobacter salexigens DSM 3043], gi\|917981...	148.0	[0..1]	[119..1]
gi\|113950705, gi... - gi\|160875000\|ref\|YP_001554316.1\| diacylglycerol kinase [Shewanella baltica OS195], gi\|160860522\|gb\|A...	142.0	[0..1]	[118..48]
gi\|68543795, gi\|... - gi\|68543795\|ref\|ZP_00583486.1\| Prokaryotic diacylglycerol kinase [Shewanella baltica OS155], gi\|6851...	142.0	[0..1]	[118..48]
gi\|114333953, gi... - gi\|114562660\|ref\|YP_750173.1\| diacylglycerol kinase [Shewanella frigidimarina NCIMB 400], gi\|1143339...	139.0	[0..1]	[119..1]
KDGL_HAEIN - Diacylglycerol kinase OS=Haemophilus influenzae GN=dgkA PE=3 SV=1 KDGL_HAEIN - Diacylglycerol kinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dgkA ...	138.0	[0..5]	[119..3]
gi\|144982956 - gi\|144982956\|gb\|EDJ90465.1\| diacylglycerol kinase [Haemophilus influenzae R3021] gi\|148718724, gi... - gi\|148827482\|ref\|YP_001292235.1\| diacylglycerol kinase [Haemophilus influenzae PittGG], gi\|148718724... gi\|148715541, gi... - gi\|148825381\|ref\|YP_001290134.1\| diacylglycerol kinase [Haemophilus influenzae PittEE], gi\|148715541... gi\|145272349, gi... - gi\|145638754\|ref\|ZP_01794363.1\| diacylglycerol kinase [Haemophilus influenzae PittII], gi\|145272349\|... gi\|68057139, gi\|... - gi\|68248940\|ref\|YP_248052.1\| diacylglycerol kinase [Haemophilus influenzae 86-028NP], gi\|68057139\|gb... gi\|145270561, gi... - gi\|145636396\|ref\|ZP_01792065.1\| diacylglycerol kinase [Haemophilus influenzae PittHH], gi\|145270561\|... gi\|229846425, gi... - gi\|229846425\|ref\|ZP_04466533.1\| diacylglycerol kinase [Haemophilus influenzae 7P49H1], gi\|229810518\|... gi\|145268212, gi... - gi\|145634667\|ref\|ZP_01790376.1\| diacylglycerol kinase [Haemophilus influenzae PittAA], gi\|145268212\|... gi\|229844574, gi... - gi\|229844574\|ref\|ZP_04464714.1\| diacylglycerol kinase [Haemophilus influenzae 6P18H1], gi\|229812823\|... gi\|53733210 - gi\|53733210\|ref\|ZP_00156174.2\| COG0818: Diacylglycerol kinase [Haemophilus influenzae R2866] gi\|145632584, gi... - gi\|145632584\|ref\|ZP_01788318.1\| DNA repair protein RecO [Haemophilus influenzae 3655], gi\|144986779\|... gi\|145631419 - gi\|145631419\|ref\|ZP_01787189.1\| diacylglycerol kinase [Haemophilus influenzae 22.4-21] gi\|144979157, gi... - gi\|145628687\|ref\|ZP_01784487.1\| DNA repair protein RecO [Haemophilus influenzae 22.1-21], gi\|1449791...	138.0	[0..5]	[119..3]
gi\|53732954 - gi\|53732954\|ref\|ZP_00155342.2\| COG0818: Diacylglycerol kinase [Haemophilus influenzae R2846]	136.0	[0..5]	[119..3]
gi\|53760017, gi\|... - gi\|91775141\|ref\|YP_544897.1\| diacylglycerol kinase [Methylobacillus flagellatus KT], gi\|91709128\|gb\|...	136.0	[0..4]	[119..6]
gi\|75824291, gi\|... - gi\|75824291\|ref\|ZP_00753750.1\| COG0818: Diacylglycerol kinase [Vibrio cholerae RC385], gi\|116217550\|... gi\|229522281, gi... - gi\|229522281\|ref\|ZP_04411697.1\| diacylglycerol kinase [Vibrio cholerae TM 11079-80], gi\|229340266\|gb... tr\|D7HCA8\|D7HCA8... - Diacylglycerol kinase OS=Vibrio cholerae GN=dgkA PE=4 SV=1, Diacylglycerol kinase OS=Vibrio cholerae...	136.0	[0..6]	[119..5]
gi\|95112084 - gi\|95112084\|emb\|CAK16811.1\| diacylglycerol kinase [Pseudomonas entomophila L48] gi\|104783097, gi... - gi\|95112084\|emb\|CAK16811.1\| diacylglycerol kinase [Pseudomonas entomophila L48], gi\|104783097\|ref\|YP...	135.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPENKANFQ RIIRAMGYSM KGLKSTYIYE AAFRQELGLA IIFIPLGFYL GDTAIEKVLL  60
   61 VGSTLLVLIV ELLNSAVEAV VDRIGSEYHE LSGRAKDIGS AAVFVTMLLF AITWLLLIF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.744727
Match:	PF01219.10
Description:	No description for PF01219.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits