YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33152315, gi\|...
Organism:	Haemophilus ducreyi 35000HP
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33152315, gi|....

Description	E-value	Query Range	Subject Range
gi\|27359954, gi\|... - gi\|27363837\|ref\|NP_759365.1\| small protein A [Vibrio vulnificus CMCP6], gi\|27359954\|gb\|AAO08892.1\|AE...	154.0	[0..1]	[116..1]
gi\|75831931, gi\|... - gi\|75831931\|ref\|ZP_00761190.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae MO10], gi\|1... SMPA_VIBCH - Small protein A homolog OS=Vibrio cholerae GN=smpA PE=3 SV=1 BAME_VIBC3 - Outer membrane protein assembly factor BamE OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Clas... gi\|75822957, gi\|... - gi\|75822957\|ref\|ZP_00752502.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae RC385], gi\|... gi\|75818218, gi\|... - gi\|75818218\|ref\|ZP_00748414.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae V51], gi\|11... BAME_VIBCH - Outer membrane protein assembly factor BamE OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El T... gi\|75816111 - gi\|75816111\|ref\|ZP_00746591.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae V52]	153.0	[0..4]	[116..5]
gi\|84387680, gi\|... - gi\|84387680\|ref\|ZP_00990697.1\| Small protein A [Vibrio splendidus 12B01], gi\|84377525\|gb\|EAP94391.1\|... gi\|148980257, gi... - gi\|148980257\|ref\|ZP_01815965.1\| Small protein A [Vibrionales bacterium SWAT-3], gi\|145961351\|gb\|EDK2...	152.0	[0..1]	[115..1]
gi\|121726019, gi... - gi\|121726019\|ref\|ZP_01679318.1\| small protein A [Vibrio cholerae V52], gi\|121631501\|gb\|EAX63871.1\| s... gi\|121550052, gi... - gi\|121585689\|ref\|ZP_01675484.1\| small protein A [Vibrio cholerae 2740-80], gi\|121550052\|gb\|EAX60068.... gi\|153818051, gi... - gi\|153818051\|ref\|ZP_01970718.1\| small protein A [Vibrio cholerae NCTC 8457], gi\|126511397\|gb\|EAZ7399... gi\|124117549, gi... - gi\|153224620\|ref\|ZP_01954527.1\| small protein A [Vibrio cholerae MAK 757], gi\|124117549\|gb\|EAY36292.... gi\|153822049, gi... - gi\|229510790\|ref\|ZP_04400269.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|146315440, gi... - gi\|227117221\|ref\|YP_002819117.1\| small protein A [Vibrio cholerae O395], gi\|227012671\|gb\|ACP08881.1\|... gi\|11356167 - gi\|11356167\|pir\|\|F82272 small protein A VC0851 [imported] - Vibrio cholerae (strain N16961 serogroup... gi\|229505539, gi... - gi\|229505539\|ref\|ZP_04395049.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|227008915, gi... - gi\|227081027\|ref\|YP_002809578.1\| small protein A [Vibrio cholerae M66-2], gi\|227008915\|gb\|ACP05127.1... gi\|229344626, gi... - gi\|229517911\|ref\|ZP_04407355.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|229349938, gi... - gi\|229513045\|ref\|ZP_04402511.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|229339055, gi... - gi\|229525474\|ref\|ZP_04414879.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|229339707, gi... - gi\|229523344\|ref\|ZP_04412751.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|254847988, gi... - gi\|254847988\|ref\|ZP_05237338.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254843693\|... gi\|9655303, gi\|1... - gi\|9655303\|gb\|AAF94013.1\| small protein A [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|1564086... gi\|229608559, gi... - gi\|229608559\|ref\|YP_002879207.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane p...	152.0	[0..4]	[116..22]
gi\|37679005, gi\|... - gi\|37679005\|ref\|NP_933614.1\| small protein A [Vibrio vulnificus YJ016], gi\|37197747\|dbj\|BAC93585.1\| ...	152.0	[0..1]	[116..1]
BAME_VIBF1 - Outer membrane protein assembly factor BamE OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=bamE ...	152.0	[0..4]	[116..5]
gi\|86145629, gi\|... - gi\|86145629\|ref\|ZP_01063959.1\| Small protein A [Vibrio sp. MED222], gi\|85836600\|gb\|EAQ54726.1\| Small...	152.0	[0..1]	[115..1]
gi\|75857319, gi\|... - gi\|75857319\|ref\|ZP_00764935.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio sp. Ex25], gi\|116186...	150.0	[0..1]	[117..1]
gi\|148828023, gi... - gi\|148828023\|ref\|YP_001292776.1\| small protein A [Haemophilus influenzae PittGG], gi\|148719265\|gb\|AB... gi\|42630334 - gi\|42630334\|ref\|ZP_00155878.1\| COG2913: Small protein A (tmRNA-binding) [Haemophilus influenzae R284... gi\|148716675, gi... - gi\|148826515\|ref\|YP_001291268.1\| small protein A [Haemophilus influenzae PittEE], gi\|148716675\|gb\|AB... gi\|229810895, gi... - gi\|229845891\|ref\|ZP_04466003.1\| lysyl-tRNA synthetase [Haemophilus influenzae 7P49H1], gi\|229810895\|... gi\|145270126, gi... - gi\|145636600\|ref\|ZP_01792267.1\| small protein A [Haemophilus influenzae PittHH], gi\|145270126\|gb\|EDK... gi\|145634747, gi... - gi\|145634747\|ref\|ZP_01790455.1\| small protein A [Haemophilus influenzae PittAA], gi\|145267913\|gb\|EDK... gi\|144987104, gi... - gi\|145632197\|ref\|ZP_01787932.1\| lysyl-tRNA synthetase [Haemophilus influenzae 3655], gi\|144987104\|gb...	150.0	[0..1]	[117..1]
gi\|12722317, gi\|... - gi\|15603751\|ref\|NP_246825.1\| hypothetical protein PM1886 [Pasteurella multocida subsp. multocida str...	149.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKSLLAIA LLAVGVTGCS TIKKVVYRID VPQGNYLEQD KIDQVKIGMN KTQVQYLLGT  60
   61 PMLKDIFHLE RWNYVFIKRE GYNDPVQHTL FIYFDKNGLV KDIQLDKPIL EAESQQEMPK 120
  121 ETENMPN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.744727
Match:	PF04355.4
Description:	No description for PF04355.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits