YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|8118047
Organism:	Haemophilus ducreyi
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8118047.

Description	E-value	Query Range	Subject Range
gi\|52425017, gi\|... - gi\|52425017\|ref\|YP_088154.1\| hypothetical protein MS0962 [Mannheimia succiniciproducens MBEL55E], gi...	132.0	[0..1]	[100..35]
gi\|75430394, gi\|... - gi\|75430394\|ref\|ZP_00732755.1\| conserved hypothetical protein HI1333 [Actinobacillus succinogenes 13...	132.0	[0..3]	[100..1]
gi\|15602578, gi\|... - gi\|15602578\|ref\|NP_245650.1\| hypothetical protein PM0713 [Pasteurella multocida subsp. multocida str...	131.0	[0..1]	[100..1]
gi\|34105105, gi\|... - gi\|34499254\|ref\|NP_903469.1\| hypothetical protein CV_3799 [Chromobacterium violaceum ATCC 12472], gi...	130.0	[0..1]	[104..55]
gi\|23467071, gi\|... - gi\|23467071\|ref\|ZP_00122656.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly...	128.0	[0..3]	[99..1]
gi\|168825857, gi... - gi\|32029182\|ref\|ZP_00132246.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly...	126.0	[0..3]	[99..1]
gi\|56421058, gi\|... - gi\|56421058\|ref\|YP_148376.1\| hypothetical protein GK2523 [Geobacillus kaustophilus HTA426], gi\|56380...	123.0	[0..5]	[98..2]
gi\|152025515, gi... - gi\|89201417\|ref\|ZP_01180158.1\| Protein of unknown function UPF0044 [Bacillus cereus subsp. cytotoxis...	122.0	[0..5]	[98..2]
gi\|205343302, gi... - gi\|205343302\|gb\|EDZ30066.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica serova... gi\|194405176, gi... - gi\|194446513\|ref\|YP_002042554.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica s... gi\|194449616, gi... - gi\|194449616\|ref\|YP_002047326.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serov... gi\|194472937, gi... - gi\|194472937\|ref\|ZP_03078921.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica se... gi\|168237997, gi... - gi\|197289071\|gb\|EDY28440.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica serova... gi\|168243131, gi... - gi\|205337825\|gb\|EDZ24589.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica serova... gi\|168262692, gi... - gi\|205348350\|gb\|EDZ34981.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica serova... gi\|195633616, gi... - gi\|195633616\|gb\|EDX52030.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica serova... gi\|161365669, gi... - gi\|161616305\|ref\|YP_001590270.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serov... gi\|205323204, gi... - gi\|205323204\|gb\|EDZ11043.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica serova... gi\|167995304, gi... - gi\|205327002\|gb\|EDZ13766.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica serova... gi\|205333735, gi... - gi\|205333735\|gb\|EDZ20499.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica serova... gi\|160867486, gi... - gi\|161506139\|ref\|YP_001573251.1\| RNA-binding protein YhbY [Salmonella enterica subsp. arizonae serov... gi\|213622211 - gi\|213622211\|ref\|ZP_03374994.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serova... gi\|213646995 - gi\|213646995\|ref\|ZP_03377048.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serova... gi\|213852788 - gi\|213852788\|ref\|ZP_03382320.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serova... gi\|214000935 - gi\|214000935\|ref\|ZP_03411670.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serova... gi\|213162025 - gi\|213162025\|ref\|ZP_03347735.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serova... gi\|213421312 - gi\|213421312\|ref\|ZP_03354378.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serova... gi\|213425424 - gi\|213425424\|ref\|ZP_03358174.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serova... gi\|213584092 - gi\|213584092\|ref\|ZP_03365918.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serova... gi\|198244680, gi... - gi\|198244680\|ref\|YP_002217270.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica s... gi\|200386795, gi... - gi\|200386795\|ref\|ZP_03213407.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica se... gi\|204931224, gi... - gi\|204931224\|ref\|ZP_03222018.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica se... gi\|213027548 - gi\|213027548\|ref\|ZP_03341995.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serova... gi\|194712794, gi... - gi\|194737292\|ref\|YP_002116246.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica s... gi\|197249374, gi... - gi\|197249374\|ref\|YP_002148222.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica s... gi\|197265486, gi... - gi\|197265486\|ref\|ZP_03165560.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica se... gi\|197095634, gi... - gi\|197364157\|ref\|YP_002143794.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serov... gi\|62129439, gi\|... - gi\|62181806\|ref\|YP_218223.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serovar C... gi\|56129484, gi\|... - gi\|56415227\|ref\|YP_152302.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serovar P... gi\|16421856 - gi\|16421856\|gb\|AAL22168.1\| putative RNA-binding protein [Salmonella enterica subsp. enterica serovar... gi\|29143549, gi\|... - gi\|29143549\|ref\|NP_806891.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serovar T... gi\|16504363, gi\|... - gi\|25329776\|pir\|\|AI0902 conserved hypothetical protein STY3476 [imported] - Salmonella enterica subs... gi\|224585093, gi... - gi\|224585093\|ref\|YP_002638892.1\| hypothetical protein SPC_3366 [Salmonella enterica subsp. enterica ... gi\|16762060 - gi\|16762060\|ref\|NP_457677.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serovar T... gi\|238910091 - gi\|238910091\|ref\|ZP_04653928.1\| RNA-binding protein YhbY [Salmonella enterica subsp. enterica serova...	122.0	[0..2]	[99..13]
gi\|27065143, gi\|... - gi\|27065144\|pdb\|1JO0\|B Chain B, Structure Of Hi1333, A Hypothetical Protein From Haemophilus Influen...	122.0	[0..4]	[100..2]

Back

Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITLTTKQK QFLKGLAHHL SPVVMLGGNG LTEGVLAEID NALQHHELIK VKIAGADREM  60
   61 KQLIINAIIR ETNAINIQTI GHILVLFRQS DEKKISLPKA TKSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1jo0A
Description:	YhbY homologue HI1333
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits