YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33151930, gi\|...
Organism:	Haemophilus ducreyi 35000HP
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33151930, gi|....

Description	E-value	Query Range	Subject Range
gi\|52424672, gi\|... - gi\|52424672\|ref\|YP_087809.1\| hypothetical protein MS0617 [Mannheimia succiniciproducens MBEL55E], gi...	277.0	[0..1]	[266..1]
gi\|75431505, gi\|... - gi\|75431505\|ref\|ZP_00733013.1\| hypothetical protein AsucDRAFT_0274 [Actinobacillus succinogenes 130Z...	277.0	[0..1]	[266..1]
gi\|46143295 - gi\|46143295\|ref\|ZP_00135517.2\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	276.0	[0..1]	[266..1]
gi\|81243500, gi\|... - gi\|82779352\|ref\|YP_405701.1\| sorbose-permease PTS system IIC component [Shigella dysenteriae Sd197],...	274.0	[0..1]	[263..1]
gi\|12518957, gi\|... - gi\|15804610\|ref\|NP_290651.1\| putative sorbose PTS component [Escherichia coli O157:H7 EDL933], gi\|12... gi\|189357561, gi... - gi\|189357561\|gb\|EDU75980.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|15834254, gi\|... - gi\|15834254\|ref\|NP_313027.1\| sorbose-permease PTS system IIC component [Escherichia coli O157:H7], g... gi\|188015045, gi... - gi\|188015045\|gb\|EDU53167.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|168780407, gi... - gi\|189001653\|gb\|EDU70639.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|187769895, gi... - gi\|187769895\|gb\|EDU33739.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|168766255, gi... - gi\|189364008\|gb\|EDU82427.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|168760860, gi... - gi\|189368659\|gb\|EDU87075.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|254595417, gi... - gi\|254796017\|ref\|YP_003080854.1\| putative sorbose PTS component [Escherichia coli O157:H7 str. TW143... gi\|15834254, gi\|... - gi\|15834254\|ref\|NP_313027.1\| sorbose-permease PTS system IIC component [Escherichia coli O157:H7 str... gi\|208805758, gi... - gi\|208805758\|ref\|ZP_03248095.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheric... gi\|195935783 - gi\|195935783\|ref\|ZP_03081165.1\| sorbose-permease PTS system IIC component [Escherichia coli O157:H7 ... gi\|189379185, gi... - gi\|189379185\|gb\|EDU97601.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|189375031, gi... - gi\|189375031\|gb\|EDU93447.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|217324606, gi... - gi\|217324606\|ref\|ZP_03440690.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheric... gi\|209159521, gi... - gi\|209398121\|ref\|YP_002273537.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheri... gi\|25287807, gi\|... - pir\|\|D86094 probable sorbose PTS component Z5615 [imported] - Escherichia coli (strain O157:H7, subs... gi\|208741666, gi... - gi\|208821543\|ref\|ZP_03261863.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheric... gi\|208735646, gi... - gi\|208814369\|ref\|ZP_03255698.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheric...	273.0	[0..1]	[263..1]
gi\|74314512, gi\|... - gi\|74314512\|ref\|YP_312931.1\| putative sorbose-permease PTS system IIC component [Shigella sonnei Ss0...	272.0	[0..1]	[263..1]
gi\|170684109, gi... - gi\|170684109\|ref\|YP_001746406.1\| PTS system mannose/fructose/sorbose family IIC subunit [Escherichia... gi\|191171971, gi... - gi\|191171971\|ref\|ZP_03033516.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheric... gi\|26111226, gi\|... - gi\|26250795\|ref\|NP_756835.1\| PTS system, mannose-specific IIC component [Escherichia coli CFT073], g... gi\|226901484, gi... - gi\|237703572\|ref\|ZP_04534053.1\| PTS system [Escherichia sp. 3_2_53FAA], gi\|226901484\|gb\|EEH87743.1\| ... gi\|110644356, gi... - gi\|110644356\|ref\|YP_672086.1\| PTS system, sorbose-specific IIC component [Escherichia coli 536], gi\|... gi\|227886978, gi... - gi\|227886978\|ref\|ZP_04004783.1\| sorbose-permease PTS system IIC component [Escherichia coli 83972], ... gi\|117626286, gi... - gi\|117626286\|ref\|YP_859609.1\| putative sorbose-permease PTS system IIC component SorA [Escherichia c... gi\|91213538, gi\|... - gi\|91213538\|ref\|YP_543524.1\| PTS system, mannose-specific IIC component [Escherichia coli UTI89], gi... gi\|218429866, gi... - gi\|218692302\|ref\|YP_002400514.1\| sorbose permease IIC component (PTS system) [Escherichia coli ED1a]... gi\|218702659, gi... - gi\|218702659\|ref\|YP_002410288.1\| sorbose permease IIC component (PTS system) [Escherichia coli IAI39... gi\|215267427, gi... - gi\|215489355\|ref\|YP_002331786.1\| sorbose-permease PTS system IIC component [Escherichia coli O127:H6... gi\|218561087, gi... - gi\|218561087\|ref\|YP_002394000.1\| sorbose permease IIC component (PTS system) [Escherichia coli S88],...	272.0	[0..1]	[266..1]
gi\|110617414, gi... - gi\|110807866\|ref\|YP_691386.1\| putative sorbose-permease PTS system IIC component [Shigella flexneri ...	272.0	[0..1]	[263..1]
gi\|82546360, gi\|... - gi\|82546360\|ref\|YP_410307.1\| putative sorbose-permease PTS system IIC component [Shigella boydii Sb2...	270.0	[0..1]	[263..1]
PTRC_KLEPN - Sorbose permease IIC component OS=Klebsiella pneumoniae GN=sorA PE=3 SV=1	266.0	[0..1]	[266..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISTLQVIL VFLVACVCGA GSILDEFQTH RPLIACTLIG LVLGDLTTGI IVGGSLELLA  60
   61 LGWMNIGAAL APDTALASVI ATILVIVGKQ DISTGIAVAI PLAAAGQVLT YVVRAITVGF 120
  121 QHAADKSVLD GNLARLDWIH FTALLLQAMR IAIPALIVAL TA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [163-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTDAVQMMLQ AIPDVVTTGL KIAGGFIAVV GYAMVINMMR AGHLMPFFYA GFVVAAFTDF  60
   61 NLVALGVLGT IMAVIYIQIH PKYHKSQQVV TLPTANNELD NRLD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits