YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33147940, gi\|...
Organism:	Haemophilus ducreyi 35000HP
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33147940, gi|....

Description	E-value	Query Range	Subject Range
VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 /... VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae GN=HI_1568 PE=4 SV=1	177.0	[0..1]	[138..1]
gi\|11282881 - pir\|\|F81900 hypothetical protein NMA1316 [imported] - Neisseria meningitidis (strain Z2491 serogroup... gi\|7379992, gi\|1... - gi\|7379992\|emb\|CAB84568.1\| hypothetical protein NMA1316 [Neisseria meningitidis Z2491], gi\|15794245\|...	162.0	[0..1]	[137..1]
gi\|168826957, gi... - gi\|32029862\|ref\|ZP_00132816.1\| COG5005: Mu-like prophage protein gpG [Haemophilus somnus 2336], gi\|1...	161.0	[0..1]	[138..1]
gi\|75512140, gi\|... - gi\|75512140\|ref\|ZP_00734712.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli 53638], gi\|18...	153.0	[0..1]	[138..6]
gi\|75255744, gi\|... - gi\|75255744\|ref\|ZP_00727505.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli E22], gi\|1930... gi\|218370285, gi... - gi\|218700299\|ref\|YP_002407928.1\| Putative phage virion morphogenesis (putative tail completion) prot... gi\|75228565, gi\|... - gi\|75228565\|ref\|ZP_00715199.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli B7A], gi\|1911...	152.0	[0..1]	[138..6]
gi\|213855899 - gi\|213855899\|ref\|ZP_03384139.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213610157 - gi\|213610157\|ref\|ZP_03369983.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213648562 - gi\|213648562\|ref\|ZP_03378615.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213427422 - gi\|213427422\|ref\|ZP_03360172.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213581732 - gi\|213581732\|ref\|ZP_03363558.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213024650 - gi\|213024650\|ref\|ZP_03339097.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|29137452, gi\|... - gi\|29141824\|ref\|NP_805166.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ser...	152.0	[0..1]	[138..6]
gi\|16502707, gi\|... - gi\|25512946\|pir\|\|AG0686 probable bacteriophage protein STY1618 [imported] - Salmonella enterica subs... gi\|16760412 - gi\|16760412\|ref\|NP_456029.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ser...	151.0	[0..1]	[138..6]
gi\|85058816, gi\|... - gi\|85058816\|ref\|YP_454518.1\| hypothetical protein SG0838 [Sodalis glossinidius str. 'morsitans'], gi...	149.0	[0..1]	[138..6]
gi\|36786747, gi\|... - gi\|37527313\|ref\|NP_930657.1\| hypothetical protein plu3439 [Photorhabdus luminescens subsp. laumondii...	141.0	[0..2]	[136..4]

Back

Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKIEINGID EIIAKLNLIA NKTENKTDLM RNIAGTMESA VQTNFEVGGR PKWLGIKHRK  60
   61 GVPLVDSENL MDSITSAYDN DTAFVGTNEE YAAIHQFGGM AGRGCKVKIE ARPFLTLTEQ 120
  121 DKSDILEEIT DYWQRLLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.522879
Match:	PF05069.4
Description:	No description for PF05069.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.545	N/A	N/A	a.118.1	ARM repeat
View	Download	0.492	N/A	N/A	d.278.1	Description not found.
View	Download	0.456	N/A	N/A	a.126.1	Serum albumin-like
View	Download	0.443	N/A	N/A	a.126.1	Serum albumin-like
View	Download	0.347	N/A	N/A	d.278.1	Description not found.
View	Download	0.345	N/A	N/A	d.379.1	Description not found.
View	Download	0.343	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.307	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.296	N/A	N/A	d.224.1	SufE-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits