YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6969435
Organism:	Haemophilus ducreyi
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6969435.

Description	E-value	Query Range	Subject Range
gi\|32033869 - gi\|32033869\|ref\|ZP_00134140.1\| COG3439: Uncharacterized conserved protein [Actinobacillus pleuropneu... gi\|126208618, gi... - gi\|126208618\|ref\|YP_001053843.1\| putative periplasmic protein [Actinobacillus pleuropneumoniae L20],...	144.0	[0..1]	[149..1]
gi\|7479908 - pir\|\|T36204 hypothetical protein SCE36.05c - Streptomyces coelicolor gi\|4757089, gi\|2... - gi\|4757089\|emb\|CAB42074.1\| hypothetical protein [Streptomyces coelicolor A3(2)], gi\|21221864\|ref\|NP_...	141.0	[0..1]	[149..259]
gi\|54298310, gi\|... - gi\|54298310\|ref\|YP_124679.1\| hypothetical protein lpp2368 [Legionella pneumophila str. Paris], gi\|53...	141.0	[0..23]	[147..5]
gi\|11280553 - pir\|\|H81946 probable periplasmic protein NMA0993 [imported] - Neisseria meningitidis (strain Z2491 s... gi\|15793950, gi\|... - gi\|7379696\|emb\|CAB84263.1\| putative periplasmic protein [Neisseria meningitidis Z2491], gi\|218767902...	141.0	[0..6]	[149..8]
gi\|52628356, gi\|... - gi\|52841245\|ref\|YP_095044.1\| hypothetical protein lpg1011 [Legionella pneumophila subsp. pneumophila... gi\|19881007 - gi\|19881007\|gb\|AAM00634.1\| unknown [Legionella pneumophila]	140.0	[0..23]	[147..5]
gi\|254668203, gi... - gi\|254804661\|ref\|YP_003082882.1\| hypothetical protein NMO_0671 [Neisseria meningitidis], gi\|25466820... gi\|11280554 - pir\|\|D81158 conserved hypothetical protein NMB0783 [imported] - Neisseria meningitidis (strain MC58 ... gi\|7226015, gi\|1... - gi\|7226015\|gb\|AAF41196.1\| conserved hypothetical protein [Neisseria meningitidis MC58], gi\|15676681\|...	140.0	[0..6]	[149..8]
gi\|32266219, gi\|... - gi\|32266219\|ref\|NP_860251.1\| hypothetical protein HH0720 [Helicobacter hepaticus ATCC 51449], gi\|322...	139.0	[0..1]	[146..1]
gi\|113461801, gi... - gi\|113461801\|ref\|YP_719870.1\| hypothetical protein HS_1665 [Haemophilus somnus 129PT], gi\|112823844\|...	137.0	[0..3]	[149..1]
gi\|170718113, gi... - gi\|53728690\|ref\|ZP_00131767.2\| COG3439: Uncharacterized conserved protein [Haemophilus somnus 2336],...	134.0	[0..3]	[149..1]
gi\|110285615, gi... - ref\|ZP_00194732.1\| COG3439: Uncharacterized conserved protein [Mesorhizobium sp. BNC1], gi\|110634631...	134.0	[0..22]	[148..1]

Back

Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKKIALWS LLLPTFAMAE QNLKPQVFES KFDFQQTLST LEETFLQKGM KIFTKIDHQA  60
   61 AAKAVGLTMQ PATVLIYGTP QVGTALMIKD PLLALQLPLK VLVTEANAGH VEVILNNAEQ 120
  121 IVAHTNTPYK EVENSLAKAE KLIQTTIAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.154902
Match:	1q9uA
Description:	Crystal structure of hypothetical protein APC35924 from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits