YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33147813, gi\|...
Organism:	Haemophilus ducreyi 35000HP
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33147813, gi|....

Description	E-value	Query Range	Subject Range
gi\|190150541, gi... - gi\|190150541\|ref\|YP_001969066.1\| hypothetical protein APP7_1272 [Actinobacillus pleuropneumoniae ser... gi\|32035604 - gi\|32035604\|ref\|ZP_00135525.1\| COG2606: Uncharacterized conserved protein [Actinobacillus pleuropneu... gi\|126208689, gi... - gi\|126208689\|ref\|YP_001053914.1\| hypothetical protein APL_1221 [Actinobacillus pleuropneumoniae L20]...	179.0	[0..1]	[157..1]
gi\|145638952, gi... - gi\|145638952\|ref\|ZP_01794560.1\| tRNA pseudouridine synthase C [Haemophilus influenzae PittII], gi\|14... gi\|144978300, gi... - gi\|145629457\|ref\|ZP_01785255.1\| tRNA pseudouridine synthase C [Haemophilus influenzae 22.1-21], gi\|1... gi\|42631733 - gi\|42631733\|ref\|ZP_00157271.1\| COG2606: Uncharacterized conserved protein [Haemophilus influenzae R2...	173.0	[0..1]	[155..1]
gi\|145267857, gi... - gi\|145634991\|ref\|ZP_01790698.1\| tRNA pseudouridine synthase C [Haemophilus influenzae PittAA], gi\|14... Y1434_HAEIN, YBA... - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK OS=Haemophilus influenzae GN=ybaK PE=1 SV=2, Uncharacteri... gi\|144986455, gi... - gi\|145632799\|ref\|ZP_01788532.1\| tRNA pseudouridine synthase C [Haemophilus influenzae 3655], gi\|1449... gi\|229844091, gi... - gi\|229844091\|ref\|ZP_04464232.1\| hypothetical protein CGSHi6P18H1_06626 [Haemophilus influenzae 6P18H... gi\|229846711, gi... - gi\|229846711\|ref\|ZP_04466818.1\| hypothetical protein CGSHi7P49H1_01768 [Haemophilus influenzae 7P49H... gi\|145641591, gi... - gi\|145641591\|ref\|ZP_01797168.1\| hypothetical protein CGSHiR3021_01532 [Haemophilus influenzae R3021]... gi\|148718176, gi... - gi\|148826934\|ref\|YP_001291687.1\| hypothetical protein CGSHiGG_01040 [Haemophilus influenzae PittGG],... gi\|148716134, gi... - gi\|148825974\|ref\|YP_001290727.1\| hypothetical protein CGSHiEE_04755 [Haemophilus influenzae PittEE],... gi\|145641591 - gi\|145641591\|ref\|ZP_01797168.1\| hypothetical protein CGSHiR3021_01532 [Haemophilus influenzae R3021] gi\|145636143, gi... - gi\|145636143\|ref\|ZP_01791813.1\| hypothetical protein CGSHiHH_09350 [Haemophilus influenzae PittHH], ... YBAK_HAEIN - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 ... gi\|42629461 - gi\|42629461\|ref\|ZP_00155007.1\| COG2606: Uncharacterized conserved protein [Haemophilus influenzae R2... gi\|48866707, gi\|... - gi\|68250037\|ref\|YP_249149.1\| hypothetical protein NTHI1699 [Haemophilus influenzae 86-028NP], gi\|680...	173.0	[0..1]	[155..1]
gi\|1074777 - pir\|\|H64171 hypothetical protein HI1434 - Haemophilus influenzae (strain Rd KW20) gi\|1574272, gi\|1... - gi\|16273339\|ref\|NP_439583.1\| hypothetical protein HI1434 [Haemophilus influenzae Rd KW20], gi\|157427...	172.0	[0..1]	[155..1]
gi\|9257097, gi\|9... - gi\|9257098\|pdb\|1DBX\|B Chain B, Crystal Structure Of Cysteinyl-Trna(Pro) Deacylase From H. Influenzae...	170.0	[0..1]	[155..1]
gi\|209910956, gi... - gi\|209917697\|ref\|YP_002291781.1\| hypothetical protein ECSE_0506 [Escherichia coli SE11], gi\|20991095... gi\|73854539, gi\|... - gi\|74311062\|ref\|YP_309481.1\| hypothetical protein SSON_0470 [Shigella sonnei Ss046], gi\|73854539\|gb\|... gi\|81239937, gi\|... - gi\|82775789\|ref\|YP_402136.1\| hypothetical protein SDY_0437 [Shigella dysenteriae Sd197], gi\|81239937... gi\|187427500, gi... - gi\|75177572\|ref\|ZP_00697653.1\| COG2606: Uncharacterized conserved protein [Shigella boydii BS512], g... gi\|81244386, gi\|... - gi\|82542975\|ref\|YP_406922.1\| hypothetical protein SBO_0383 [Shigella boydii Sb227], gi\|81244386\|gb\|A...	168.0	[0..1]	[156..1]
gi\|75257874, gi\|... - gi\|75257874\|ref\|ZP_00729352.1\| COG2606: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|75514604, gi\|... - gi\|75514604\|ref\|ZP_00736859.1\| COG2606: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|85674620, gi\|... - gi\|89107350\|ref\|AP_001130.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|169756059, gi... - gi\|170021131\|ref\|YP_001726085.1\| hypothetical protein EcolC_3135 [Escherichia coli ATCC 8739], gi\|16... YBAK_ECOLI - Protein ybaK - Escherichia coli gi\|215263633, gi... - gi\|215485561\|ref\|YP_002327992.1\| hypothetical protein E2348C_0416 [Escherichia coli O127:H6 str. E23... gi\|170080066, gi... - gi\|170080066\|ref\|YP_001729386.1\| bifunctional cys-tRNA Pro deacetylase and cys-tRNA Cys deacylase [E... gi\|83570185, gi\|... - gi\|83570185\|ref\|ZP_00921631.1\| COG2606: Uncharacterized conserved protein [Shigella dysenteriae 1012... gi\|194423583, gi... - gi\|83587064\|ref\|ZP_00925694.1\| COG2606: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|110614054, gi... - gi\|110804506\|ref\|YP_688026.1\| hypothetical protein SFV_0454 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|157158258, gi... - gi\|75189549\|ref\|ZP_00702816.1\| COG2606: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|157160008, gi... - gi\|75194701\|ref\|ZP_00704771.1\| COG2606: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|75209763, gi\|... - gi\|75209763\|ref\|ZP_00709965.1\| COG2606: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|190902450, gi... - gi\|75229358\|ref\|ZP_00715913.1\| COG2606: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|193067716, gi... - gi\|75239023\|ref\|ZP_00723005.1\| COG2606: Uncharacterized conserved protein [Escherichia coli E110019]... EG12454 - Cys-tRNA(Pro) /Cys-tRNA(Cys) deacylase / Cys-tRNA(Pro) /Cys-tRNA(Cys) deacylase, tRNA editing gi\|218350675, gi... - gi\|218693943\|ref\|YP_002401610.1\| hypothetical protein EC55989_0494 [Escherichia coli 55989], gi\|2183... gi\|218553047, gi... - gi\|218553047\|ref\|YP_002385960.1\| hypothetical protein ECIAI1_0484 [Escherichia coli IAI1], gi\|218359... gi\|218703764, gi... - gi\|218703764\|ref\|YP_002411283.1\| hypothetical protein ECUMN_0520 [Escherichia coli UMN026], gi\|21843... EG12454 - Cys-tRNA(Pro) /Cys-tRNA(Cys) deacylase / Cys-tRNA(Pro) /Cys-tRNA(Cys) deacylase, tRNA editing gi\|238899768, gi... - gi\|238899768\|ref\|YP_002925564.1\| hypothetical protein BWG_0362 [Escherichia coli BW2952], gi\|2388602... gi\|242376262, gi... - gi\|251783989\|ref\|YP_002998293.1\| hypothetical protein B21_00437 [Escherichia coli BL21], gi\|24237626... gi\|254287354, gi... - gi\|254287354\|ref\|YP_003053102.1\| hypothetical protein ECD_00432 [Escherichia coli BL21(DE3)], gi\|253... gi\|253972451, gi... - gi\|254160550\|ref\|YP_003043658.1\| hypothetical protein ECB_00432 [Escherichia coli B str. REL606], gi... gi\|24050660, gi\|... - gi\|24111864\|ref\|NP_706374.1\| hypothetical protein SF0426 [Shigella flexneri 2a str. 301], gi\|2405066... gi\|30061981, gi\|... - gi\|30061981\|ref\|NP_836152.1\| hypothetical protein S0433 [Shigella flexneri 2a str. 2457T], gi\|300402... gi\|124499292, gi... - gi\|124530267\|ref\|ZP_01700986.1\| ybaK/ebsC protein [Escherichia coli B], gi\|124499292\|gb\|EAY46783.1\| ... YBAK_SHIFL - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK OS=Shigella flexneri GN=ybaK PE=3 SV=1	168.0	[0..1]	[156..1]
gi\|117622740, gi... - gi\|117622740\|ref\|YP_851653.1\| hypothetical protein APECO1_1532 [Escherichia coli APEC O1], gi\|115511... gi\|227884506, gi... - gi\|227884506\|ref\|ZP_04002311.1\| transcriptional regulator [Escherichia coli 83972], gi\|227838592\|gb\|... gi\|237707519, gi... - gi\|237707519\|ref\|ZP_04538000.1\| ybaK [Escherichia sp. 3_2_53FAA], gi\|226898729\|gb\|EEH84988.1\| ybaK [... gi\|26106894, gi\|... - gi\|26246496\|ref\|NP_752535.1\| hypothetical protein c0601 [Escherichia coli CFT073], gi\|26106894\|gb\|AA... gi\|110342336, gi... - gi\|110640744\|ref\|YP_668472.1\| hypothetical protein ECP_0544 [Escherichia coli 536], gi\|110342336\|gb\|... gi\|190906048, gi... - gi\|75238235\|ref\|ZP_00722236.1\| COG2606: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|218425909, gi... - gi\|218688345\|ref\|YP_002396557.1\| hypothetical protein ECED1_0505 [Escherichia coli ED1a], gi\|2184259... gi\|218557393, gi... - gi\|218557393\|ref\|YP_002390306.1\| hypothetical protein ECS88_0480 [Escherichia coli S88], gi\|21836416... gi\|91209557, gi\|... - gi\|91209557\|ref\|YP_539543.1\| hypothetical protein UTI89_C0511 [Escherichia coli UTI89], gi\|91071131\|...	168.0	[0..1]	[156..1]
gi\|77811968, gi\|... - gi\|77813133\|ref\|ZP_00812414.1\| Conserved hypothetical protein 11 [Shewanella putrefaciens CN-32], gi... gi\|82741980, gi\|... - gi\|82741980\|ref\|ZP_00904687.1\| Conserved hypothetical protein 11 [Shewanella sp. W3-18-1], gi\|827206... gi\|124510239, gi... - gi\|124546287\|ref\|ZP_01705392.1\| ybaK/ebsC protein [Shewanella putrefaciens 200], gi\|124510239\|gb\|EAY...	167.0	[0..1]	[156..1]
SO1124 - conserved hypothetical protein TIGR00011 gi\|24372707, gi\|... - gi\|24372707\|ref\|NP_716749.1\| hypothetical protein SO_1124 [Shewanella oneidensis MR-1], gi\|24346765\|...	166.0	[0..1]	[156..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPAINLLNK QKIAYQLHPY PHDPQNHNFG QEAVEKLGLP AAQVFKTLLV AENGDQKKLA  60
   61 VMVVPVANSL NLKRAAQALA VKKVTMADKD IAQKVTGYLL GGISPLGQKN KLMTIIDQSA 120
  121 KDFATIFVSG GKRGLDVEIA PRDLATVLQA VFADIKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	1dbuA
Description:	Hypothetical protein HI1434 (YbaK homologue)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits