YRC Public Data Repository - Protein Structure Prediction

Protein:	FABA_HAEDU
Organism:	Haemophilus ducreyi 35000HP
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABA_HAEDU.

Description	E-value	Query Range	Subject Range
FABA_PASMU - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pasteurella multocida GN=fabA PE=3 SV=1 FABA_PASMU - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pasteurella multocida (strain Pm70) GN=fabA ...	226.0	[0..1]	[176..2]
gi\|32034244 - gi\|32034244\|ref\|ZP_00134455.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABA_ACTP2 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Actinobacillus pleuropneumoniae serotype 5b ... FABA_ACTP7 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Actinobacillus pleuropneumoniae serotype 7 (... FABA_ACTPJ - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Actinobacillus pleuropneumoniae serotype 3 (...	221.0	[0..1]	[176..1]
FABA_VIBFM - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Vibrio fischeri (strain MJ11) GN=fabA PE=3 S... FABA_VIBF1 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Vibrio fischeri (strain ATCC 700601 / ES114)...	216.0	[0..5]	[176..1]
FABA_VIBPA - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Vibrio parahaemolyticus GN=fabA PE=3 SV=1 FABA_VIBPA - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Vibrio parahaemolyticus serotype O3:K6 (stra...	216.0	[0..5]	[176..1]
gi\|145273692, gi... - gi\|145641645\|ref\|ZP_01797222.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae R3021], gi... FABA_HAEIG - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Haemophilus influenzae (strain PittGG) GN=fa... FABA_HAEIN - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Haemophilus influenzae GN=fabA PE=3 SV=1 gi\|145641645 - gi\|145641645\|ref\|ZP_01797222.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae R3021] gi\|145638904, gi... - gi\|145638904\|ref\|ZP_01794512.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae PittII], g... gi\|145636189, gi... - gi\|145636189\|ref\|ZP_01791859.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae PittHH], g... gi\|145633189, gi... - gi\|145633189\|ref\|ZP_01788920.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae 3655], gi\|... gi\|144978250, gi... - gi\|145629407\|ref\|ZP_01785205.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae 22.1-21], ... gi\|46133509 - gi\|46133509\|ref\|ZP_00157311.2\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABA_HAEIN - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Haemophilus influenzae (strain ATCC 51907 / ...	216.0	[0..2]	[176..3]
gi\|53732769 - gi\|53732769\|ref\|ZP_00155045.2\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABA_HAEI8 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Haemophilus influenzae (strain 86-028NP) GN=...	216.0	[0..2]	[176..3]
gi\|117623164, gi... - gi\|117623164\|ref\|YP_852077.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Escherichia coli...	215.0	[0..1]	[176..63]
FABA_MANSM - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Mannheimia succiniciproducens (strain MBEL55...	215.0	[0..2]	[176..3]
FABA_PSEF5 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC ...	215.0	[0..7]	[176..2]
FABA_VIBVY - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Vibrio vulnificus (strain YJ016) GN=fabA PE=... FABA_VIBVU - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Vibrio vulnificus GN=fabA PE=3 SV=1 FABA_VIBVU - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Vibrio vulnificus (strain CMCP6) GN=fabA PE=...	214.0	[0..5]	[176..1]

Back

Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNCTPNIKS SYGYEDLLAS GRGELFGKEG PQLPAPTMLM MDRVNLMTEN GGLFDKGYIE  60
   61 AELDIHPDLP FFGCHFIGDP VMPGCLGLDA MWQLVGFFLG WIGGKGKGRA LGVGEVKFTG 120
  121 QILPTAKKVT YRIHMKRVIN RKLVMGLADG EVEVDGRVIY TATDLKVGLF QDTSSF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.154902
Match:	2cf2C
Description:	No description for 2cf2C was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits