YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23465589, gi\|...
Organism:	Bifidobacterium longum NCC2705
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23465589, gi|....

Description	E-value	Query Range	Subject Range
gi\|46191080, gi\|... - gi\|46191080\|ref\|ZP_00120493.2\| COG2919: Septum formation initiator [Bifidobacterium longum DJO10A], ...	2.0E-42	[9..211]	[1..203]
gi\|21221534, gi\|... - gi\|21221534\|ref\|NP_627313.1\| hypothetical protein SCO3095 [Streptomyces coelicolor A3(2)], gi\|102417...	4.0E-31	[13..160]	[34..172]
gi\|197739757, gi... - gi\|254363940\|ref\|ZP_04979986.1\| conserved membrane protein [Mycobacterium tuberculosis str. Haarlem]... gi\|167968117, gi... - gi\|167968117\|ref\|ZP_02550394.1\| hypothetical protein MtubH3_08810 [Mycobacterium tuberculosis H37Ra]... gi\|215402839 - gi\|215402839\|ref\|ZP_03415020.1\| hypothetical protein Mtub0_03937 [Mycobacterium tuberculosis 02_1987... gi\|215410627 - gi\|215410627\|ref\|ZP_03419435.1\| hypothetical protein Mtub9_04726 [Mycobacterium tuberculosis 94_M424... gi\|215426305 - gi\|215426305\|ref\|ZP_03424224.1\| hypothetical protein MtubT9_07950 [Mycobacterium tuberculosis T92] gi\|215429885 - gi\|215429885\|ref\|ZP_03427804.1\| hypothetical protein MtubE_04199 [Mycobacterium tuberculosis EAS054] gi\|215445173 - gi\|215445173\|ref\|ZP_03431925.1\| hypothetical protein MtubT_04241 [Mycobacterium tuberculosis T85] gi\|218752695 - gi\|218752695\|ref\|ZP_03531491.1\| hypothetical protein MtubG1_04280 [Mycobacterium tuberculosis GM 150... gi\|224989425, gi... - gi\|224989425\|ref\|YP_002644112.1\| hypothetical protein JTY_1053 [Mycobacterium bovis BCG str. Tokyo 1... gi\|1870004, gi\|1... - gi\|1870004\|emb\|CAB06855.1\| POSSIBLE CONSERVED MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv], g... gi\|124600374, gi... - gi\|81255031\|ref\|ZP_00879523.1\| COG2919: Septum formation initiator [Mycobacterium tuberculosis C], g... gi\|121636953, gi... - gi\|121636953\|ref\|YP_977176.1\| hypothetical protein BCG_1081 [Mycobacterium bovis BCG str. Pasteur 11... gi\|31792215, gi\|... - gi\|31792215\|ref\|NP_854708.1\| hypothetical protein Mb1052 [Mycobacterium bovis AF2122/97], gi\|3161780... gi\|15840452, gi\|... - gi\|15840452\|ref\|NP_335489.1\| hypothetical protein MT1052 [Mycobacterium tuberculosis CDC1551], gi\|13... gi\|7476602 - pir\|\|C70623 hypothetical protein Rv1024 - Mycobacterium tuberculosis (strain H37RV) gi\|123214577, gi... - gi\|76785280\|ref\|ZP_00772452.1\| COG2919: Septum formation initiator [Mycobacterium tuberculosis F11],... gi\|255095787 - gi\|255095787\|ref\|ZP_05325265.1\| hypothetical protein MtubK_05879 [Mycobacterium tuberculosis KZN 605... gi\|254814811 - gi\|254814811\|ref\|ZP_05219812.1\| hypothetical protein MtubKZN_03254 [Mycobacterium tuberculosis KZN 4... gi\|254550008 - gi\|254550008\|ref\|ZP_05140455.1\| hypothetical protein Mtube_06033 [Mycobacterium tuberculosis '98-R60... gi\|253799946, gi... - gi\|253799946\|ref\|YP_003032947.1\| hypothetical protein TBMG_02963 [Mycobacterium tuberculosis KZN 143...	4.0E-29	[17..159]	[61..199]
gi\|29830075, gi\|... - gi\|29830075\|ref\|NP_824709.1\| hypothetical protein SAV_3532 [Streptomyces avermitilis MA-4680], gi\|29...	7.0E-28	[13..160]	[26..164]
gi\|19552200, gi\|... - gi\|62389866\|ref\|YP_225268.1\| hypothetical protein cg1112 [Corynebacterium glutamicum ATCC 13032], gi...	3.0E-27	[9..161]	[1..157]
gi\|219932633, gi... - gi\|221229526\|ref\|YP_002502942.1\| hypothetical protein MLBr_00256 [Mycobacterium leprae Br4923], gi\|2... gi\|15827048 - gi\|15827048\|ref\|NP_301311.1\| hypothetical protein ML0256 [Mycobacterium leprae TN] gi\|25374106, gi\|... - pir\|\|H86940 probable membrane protein [imported] - Mycobacterium leprae, gi\|13092595\|emb\|CAC29764.1\|...	2.0E-25	[48..170]	[101..217]
gi\|152965042, gi... - gi\|69284255\|ref\|ZP_00616203.1\| Septum formation initiator [Kineococcus radiotolerans SRS30216], gi\|6...	2.0E-24	[15..181]	[52..211]
gi\|23478103 - gi\|23478103\|gb\|EAA15281.1\| maebl [Plasmodium yoelii yoelii] gi\|68532085 - gi\|68532085\|ref\|XP_723716.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	4.0E-24	[73..202]	[204..323]
gi\|71914565, gi\|... - gi\|72160833\|ref\|YP_288490.1\| hypothetical protein Tfu_0429 [Thermobifida fusca YX], gi\|71914565\|gb\|A...	1.0E-23	[28..158]	[57..177]
gi\|38199774 - gi\|38199774\|emb\|CAE49434.1\| Putative membrane protein [Corynebacterium diphtheriae] gi\|38233514 - gi\|38233514\|ref\|NP_939281.1\| hypothetical protein DIP0918 [Corynebacterium diphtheriae NCTC 13129]	2.0E-23	[15..163]	[4..155]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVFSCDMS KSSRTGKPGK TGKAQVRKKG SAGPIAFFVS LFIIALGTIQ LVSTFHTYAL  60
   61 NLAELNGLKR EEASLIAQKQ ELENDIKRWD DKAYITAQAR ERLGFVFPGE QAVRVLH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.09691
Match:	PF04977.6
Description:	No description for PF04977.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEAVTGSDSE SQKTEDSSSS NKKVLPWYSE LSYSLKKADE PVTDSVSGKS DISGSSDSSS  60
   61 NDSSKRSDKS DQNTQSDQNT QQNTQQNTGE GTQQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits