YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23465401, gi\|...
Organism:	Bifidobacterium longum NCC2705
Length:	416 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23465401, gi|....

Description	E-value	Query Range	Subject Range
gi\|46191182, gi\|... - gi\|46191182\|ref\|ZP_00120280.2\| COG0438: Glycosyltransferase [Bifidobacterium longum DJO10A], gi\|1894...	4.0E-90	[1..416]	[1..416]
gi\|85667091 - gi\|85667091\|ref\|ZP_01029313.1\| hypothetical protein Badol_01000637 [Bifidobacterium adolescentis]	2.0E-89	[1..415]	[1..414]
gi\|89210532, gi\|... - gi\|89210532\|ref\|ZP_01188920.1\| Glycogen synthase, corynebacterial [Halothermothrix orenii H 168], gi...	2.0E-78	[1..412]	[4..404]
gi\|166857219, gi... - gi\|76795460\|ref\|ZP_00777833.1\| Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus AT... gi\|166853121, gi... - gi\|167038881\|ref\|YP_001661866.1\| glycogen synthase [Thermoanaerobacter sp. X514], gi\|166853121\|gb\|AB... gi\|242231503, gi... - gi\|242256969\|ref\|ZP_04801848.1\| glycogen synthase [Thermoanaerobacter sp. X513], gi\|242231503\|gb\|EES... gi\|241885025, gi... - gi\|241902563\|ref\|ZP_04787296.1\| glycogen synthase [Thermoanaerobacter brockii subsp. finnii Ako-1], ...	6.0E-77	[1..416]	[4..388]
gi\|85821072, gi\|... - gi\|86134209\|ref\|ZP_01052791.1\| glycosyl transferase group 1 [Polaribacter sp. MED152], gi\|85821072\|g...	2.0E-75	[1..410]	[1..399]
gi\|83816539, gi\|... - gi\|83816539\|ref\|YP_446040.1\| glycosyl transferase [Salinibacter ruber DSM 13855], gi\|83757933\|gb\|ABC...	2.0E-75	[1..413]	[27..432]
gi\|84496496, gi\|... - gi\|84496496\|ref\|ZP_00995350.1\| possible glycosyltransferase [Janibacter sp. HTCC2649], gi\|84383264\|g...	3.0E-75	[1..412]	[1..396]
gi\|20806796 - gi\|20806796\|ref\|NP_621967.1\| predicted glycosyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20806796, gi\|... - gi\|20806796\|ref\|NP_621967.1\| glycosyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515259...	7.0E-75	[1..416]	[17..401]
gi\|88931361, gi\|... - gi\|88931361\|ref\|ZP_01137055.1\| Glycogen synthase, corynebacterial [Acidothermus cellulolyticus 11B],...	3.0E-73	[1..412]	[1..398]
gi\|68264069, gi\|... - gi\|68536470\|ref\|YP_251175.1\| putative glycosyltransferase [Corynebacterium jeikeium K411], gi\|682640...	9.0E-73	[1..411]	[1..394]

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Predicted Domain #1

Region A:
Residues: [1-416]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVDILTREY PPHVYGGAGV HAEELSKVLA ERIDVTVRAF DGKRTEADIP AIPNAADAKG  60
   61 SLKVVGYDTP SELADANPAL KTFGVDLQIA NDVDADIIHA HTWYACLAGY MAKMLHGTPL 120
  121 VITAHSLEPF RPWKREQLGG GYNLSSWAEK DAYEHADRVI AVSGGMRKDI LTAYPNLDPD 180
  181 KVVVVYNGIT MADFATPAPD DPGWKVFDRY NIDRSKPTLL FVGRITRQKG LPYLLKALHL 240
  241 ISKDIQVVLC AGAPDTPEIA EEVKTAFAKL DEERGNIVWI EEMLPKPELN ALEHGCDAFI 300
  301 CPSIYEPLGI VNLEAMACGL PVVASATGGI PEVVVDGETG YLVPIDQLHD GTGTPTDPDK 360
  361 FVHDMAAAID KIMADPELAK KMGQAGYERA RDVFSWETIA DKTVEVYQSV LDEQKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.39794
Match:	2bisA
Description:	Structure of glycogen synthase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring hexosyl groups	3.04530122157712	bayes_pls_golite062009
catalytic activity	3.02192459767177	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.94500176353224	bayes_pls_golite062009
glycogen phosphorylase activity	2.09116455393465	bayes_pls_golite062009
lipopolysaccharide heptosyltransferase activity	2.03374890992046	bayes_pls_golite062009
glucosyltransferase activity	1.8062586862583	bayes_pls_golite062009
transferase activity	1.67770954408305	bayes_pls_golite062009
UDP-N-acetylglucosamine 2-epimerase activity	1.63103907245982	bayes_pls_golite062009
UDP-glucosyltransferase activity	1.4199532885636	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.30934991061674	bayes_pls_golite062009
glycogen (starch) synthase activity	0.435616523537281	bayes_pls_golite062009
phosphorylase activity	0.431662083250969	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.27693350081385	bayes_pls_golite062009
alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	0.22009679964126	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: