YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33241188, gi\|...
Organism:	Prochlorococcus marinus subsp. marinus str. CCMP1375
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33241188, gi|....

Description	E-value	Query Range	Subject Range
gi\|33635555, gi\|... - gi\|33863971\|ref\|NP_895531.1\| hypothetical protein PMT1704 [Prochlorococcus marinus str. MIT 9313], g...	239.0	[0..1]	[184..1]
CCB1_ARATH - Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana GN=CCB1...	232.0	[0..3]	[173..85]
gi\|84513859, gi\|... - gi\|84519110\|ref\|ZP_01006459.1\| Uncharacterized membrane protein [Prochlorococcus marinus str. MIT 92...	224.0	[0..1]	[184..1]
gi\|46119495, gi\|... - gi\|67923215\|ref\|ZP_00516702.1\| hypothetical protein CwatDRAFT_3009 [Crocosphaera watsonii WH 8501], ...	221.0	[0..4]	[169..3]
gi\|33866570, gi\|... - gi\|33866570\|ref\|NP_898129.1\| hypothetical protein SYNW2038 [Synechococcus sp. WH 8102], gi\|33633348\|...	221.0	[0..1]	[169..1]
gi\|78211957, gi\|... - gi\|78211957\|ref\|YP_380736.1\| hypothetical protein Syncc9605_0405 [Synechococcus sp. CC9605], gi\|7819...	219.0	[0..1]	[184..1]
gi\|25343635 - pir\|\|AE2303 hypothetical protein alr3980 [imported] - Nostoc sp. (strain PCC 7120) gi\|17231472, gi\|... - gi\|17231472\|ref\|NP_488020.1\| hypothetical protein alr3980 [Nostoc sp. PCC 7120], gi\|17133114\|dbj\|BAB...	208.0	[0..3]	[169..4]
gi\|23123893, gi\|... - gi\|23123893\|ref\|ZP_00105925.1\| hypothetical protein Npun02008401 [Nostoc punctiforme PCC 73102], gi\|...	207.0	[0..17]	[169..18]
gi\|116072597, gi... - gi\|116072597\|ref\|ZP_01469863.1\| hypothetical protein BL107_08801 [Synechococcus sp. BL107], gi\|11606...	205.0	[0..1]	[184..1]
gi\|45507539, gi\|... - gi\|75907942\|ref\|YP_322238.1\| hypothetical protein Ava_1721 [Anabaena variabilis ATCC 29413], gi\|7570...	204.0	[0..3]	[169..4]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSYYSTFI LTILLAIGLA FFLRAASKDR TTIVDISSPL PPLDVLNGIS NWLEERGWRR  60
   61 EGGDADRKVL RFNGRVSSSP VLAVFLSILC GLGGACLGLV ICQLYASLNW WPLVLVLLGP 120
  121 FAGFFYRNRA SRIESLEMRL VSKVNDKKSQ LRIKAHRDEL IAIEAELAEN LQLASDGSLT 180
  181 SSPI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits