YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33240491, gi\|...
Organism:	Prochlorococcus marinus subsp. marinus str. CCMP1375
Length:	658 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33240491, gi|....

Description	E-value	Query Range	Subject Range
gi\|81169042, gi\|... - gi\|81300161\|ref\|YP_400369.1\| acetyl-CoA synthetase [Synechococcus elongatus PCC 7942], gi\|81169042\|g... gi\|56685171, gi\|... - gi\|56750212\|ref\|YP_170913.1\| acetyl-CoA synthetase [Synechococcus elongatus PCC 6301], gi\|56685171\|d...	631.0	[0..4]	[658..1]
gi\|84517905, gi\|... - gi\|84517905\|ref\|ZP_01005254.1\| acetyl-coenzyme A synthetase [Prochlorococcus marinus str. MIT 9211],...	630.0	[0..1]	[657..1]
ACSA_THEEB - Acetyl-coenzyme A synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=acsA PE=3 SV=1 ACSA_SYNEL - Acetyl-coenzyme A synthetase OS=Synechococcus elongatus GN=acsA PE=3 SV=1	627.0	[0..4]	[658..1]
gi\|75907429, gi\|... - gi\|75907429\|ref\|YP_321725.1\| acetyl-CoA synthetase [Anabaena variabilis ATCC 29413], gi\|75701154\|gb\|...	624.0	[0..4]	[658..1]
gi\|186686297, gi... - gi\|23126660\|ref\|ZP_00108549.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Nostoc...	623.0	[0..4]	[658..1]
gi\|33865547, gi\|... - gi\|33865547\|ref\|NP_897106.1\| acetyl-coenzyme A synthetase [Synechococcus sp. WH 8102], gi\|33632716\|e...	620.0	[0..3]	[657..34]
gi\|33634578, gi\|... - gi\|33862662\|ref\|NP_894222.1\| acetyl-coenzyme A synthetase [Prochlorococcus marinus str. MIT 9313], g...	618.0	[0..1]	[657..1]
gi\|87124216, gi\|... - gi\|87124216\|ref\|ZP_01080065.1\| acetyl-coenzyme A synthetase [Synechococcus sp. RS9917], gi\|86167788\|...	618.0	[0..1]	[657..1]
gi\|87302295, gi\|... - gi\|87302295\|ref\|ZP_01085120.1\| Acetate--CoA ligase [Synechococcus sp. WH 5701], gi\|87283220\|gb\|EAQ75...	617.0	[0..4]	[657..1]
gi\|113955177, gi... - gi\|113955177\|ref\|YP_730758.1\| acetate--CoA ligase [Synechococcus sp. CC9311], gi\|113882528\|gb\|ABI474...	617.0	[0..8]	[657..6]

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Predicted Domain #1

Region A:
Residues: [1-658]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDSSAKIE TVLQEERVFN PSDETINRAS IKGFAQYQKM VNSAKSDPQK FWGEAALEGL  60
   61 HWFKPFNTVL DWTDPPFARW FDGGKTNVSY NCLDRHVKQG KGEKIAIIWE GEPGEVRKIT 120
  121 YKQLLEQVCR TANALKEIGI KKGDLVALYM PMVPEAAVAM LACARIGAPH SVVFGGFSSE 180
  181 ALRDRINDGQ AKAIITADGG FRKDKIISLK NAVDSALSGN SCPSVESVLV VKRTSESISF 240
  241 SPGRDYWWHE LVPAQSIDCP AEEMDSEDRL FVLYTSGSTG KPKGVVHTTA GYNLWAHMTF 300
  301 QWIFDVREEE IYWCTADVGW ITGHSYIVYG PLSNGSTTVM YEGVPRPSNP GAFWDLIERH 360
  361 KINIFYTAPT AIRAFMKSGR DIPDKYNLKS LRLLGTVGEP INPEAWIWYR DVIGGNSCPI 420
  421 VDTWWQTETG GVMISPLPGA IPTKPGSATL PLPGIEAEIV NAEGKSVDVN QGGYLVIKHP 480
  481 WPGMMRTVHG NPQRFRESYW EYLPPINGSL VYFAGDGARR DKDGYFWIMG RVDDVINVSG 540
  541 HRLGTMEIES ALVSHNSVAE AAVVGKPDDI KGEAIVAFVT LESGANHNEK LLTDLKVHVS 600
  601 TEIGAIARPD EIRFTNSLPK TRSGKIMRRL LRALAAGEEV KGDTSTLEDR NVLDELRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	160.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits