YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33239774, gi\|...
Organism:	Prochlorococcus marinus subsp. marinus str. CCMP1375
Length:	442 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33239774, gi|....

Description	E-value	Query Range	Subject Range
gi\|7429377 - pir\|\|S76100 hypothetical protein - Synechocystis sp. (strain PCC 6803) Y154_SYNY3 - UPF0052 protein sll0154 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=sll0154 PE=3 SV... GNGF_SYNY3 - Putative gluconeogenesis factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0154 PE=3 SV=1	563.0	[0..4]	[437..34]
gi\|48892462, gi\|... - gi\|71674261\|ref\|ZP_00672008.1\| Conserved hypothetical protein CofD related [Trichodesmium erythraeum...	562.0	[0..5]	[437..31]
gi\|186685413, gi... - gi\|23127919\|ref\|ZP_00109778.1\| COG0391: Uncharacterized conserved protein [Nostoc punctiforme PCC 73...	554.0	[0..4]	[438..24]
gi\|84513385, gi\|... - gi\|84518636\|ref\|ZP_01005985.1\| hypothetical protein P9211_07267 [Prochlorococcus marinus str. MIT 92...	549.0	[0..2]	[440..64]
gi\|45525116, gi\|... - gi\|67923572\|ref\|ZP_00517045.1\| Conserved hypothetical protein CofD related [Crocosphaera watsonii WH...	547.0	[0..3]	[437..29]
gi\|33632269, gi\|... - gi\|33864746\|ref\|NP_896305.1\| hypothetical protein SYNW0210 [Synechococcus sp. WH 8102], gi\|33632269\|...	543.0	[0..4]	[441..3]
gi\|91069923 - gi\|91069923\|gb\|ABE10852.1\| conserved hypothetical protein [uncultured Prochlorococcus marinus clone ...	540.0	[0..1]	[440..22]
gi\|116075557, gi... - gi\|116075557\|ref\|ZP_01472816.1\| hypothetical protein RS9916_38866 [Synechococcus sp. RS9916], gi\|116...	539.0	[0..1]	[441..32]
gi\|88808080, gi\|... - gi\|88808080\|ref\|ZP_01123591.1\| hypothetical protein WH7805_07956 [Synechococcus sp. WH 7805], gi\|887...	537.0	[0..1]	[441..9]
gi\|75700066, gi\|... - gi\|75906341\|ref\|YP_320637.1\| hypothetical protein Ava_0116 [Anabaena variabilis ATCC 29413], gi\|7570...	533.0	[0..4]	[438..24]

Back

Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGRIQRALG WLLPGLVVKR WMLTSGLGLI VALFGASIWA DLRPIYWVIE GIFLLIGTIT  60
   61 KFLPRSITGP IVFLVGISLL IWGQSRSFKS IQNAIAPEKD DVLIDALRAK SKLNRG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [117-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNIVAIGGGT GLSALLQGLK RYSSRITAIV TVADDGGSSG ILRRELGVQP PGDIRNCLAA  60
   61 LSTEESLLTR LFQYRFSSGT GLVGHSFGNL FLSALTSITG NLETAITASS RVLAVQGQVV 120
  121 PATNADVRLW AELENGERIE GESAIGNVRS PIIRIGCYPE QPPALPSAIE AIENAELIVL 180
  181 GPGSLYTSLL PNLLVPEIVE AIQRSKAPKL YICNLMTQPG ETDGLDLAGH IRAIEAQLAS 240
  241 FGVTRRIFNS ILAQKELPPS ALLEYYLSRG AEPVICDWNR LRSQGYRLFK ASLQESKIIS 300
  301 KSVLRHDPRK LSLAVMRFYK KYKRDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	2hzbA
Description:	No description for 2hzbA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits