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View Structure Prediction Details

Protein: gi|110736628, gi...
Organism: Arabidopsis thaliana
Length: 423 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110736628, gi....

Description E-value Query
Range
Subject
Range
gi|7487635, gi|7... - pir||T04199 hypothetical protein T4F9.100 - Arabidopsis thaliana, gi|7267762|emb|CAB81165.1| putativ...
233.0 [0..1] [423..1]

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Predicted Domain #1
Region A:
Residues: [1-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKNGTSWF TAVKKILWSP SKDSDKKTHH HKETDIKRKE KKGWIFRKTK LETTNSVLQH  60
   61 TVRTVEAEEK EKPPVIVSSV EEGVTEIVKL TATPGFIRRH WAAIIIQTAF RGYLSRRALR 120
  121 ALKGIVKLQA LVRGNNVRNQ AKLTLRCIKA LVRVQDQVLN HHQQQRSRVL LSPPSRNYNI 180
  181 EARRNSMFAE SNGFWDTKTY LQDIRSRRSL SRDMNRCNNE FYSEETELIL QKKLEIAIKR 240
  241 EKAQALALSN QIRSRSSRNQ SAGDDRELLE RTQWLDRWMA TKQWDDTITN STNVRDPIKT 300
  301 LEAVTTHHHQ RSYPATPPSC RASRSVMVRS ASPR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.39794
Match: 2dfsA
Description: No description for 2dfsA was found.

Predicted Domain #2
Region A:
Residues: [335-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPCSPSSMQP NYMSATESAK AKARTQSTPR RRPMTAKKRL CYAEEESLRS PSFKSCLWGD  60
   61 HESDYSCCYG DGFAGKISPC STTELRWLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle