YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52426015, gi\|...
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52426015, gi|....

Description	E-value	Query Range	Subject Range
gi\|15602994, gi\|... - gi\|15602994\|ref\|NP_246066.1\| hypothetical protein PM1129 [Pasteurella multocida subsp. multocida str...	123.0	[0..13]	[99..1]
gi\|53732892 - gi\|53732892\|ref\|ZP_00155232.2\| COG3036: Uncharacterized protein conserved in bacteria [Haemophilus i... gi\|144983376 - gi\|144983376\|gb\|EDJ90858.1\| hypothetical protein CGSHi22421_05515 [Haemophilus influenzae R3021] gi\|145637212, gi... - gi\|145637212\|ref\|ZP_01792874.1\| hypothetical protein CGSHiHH_00813 [Haemophilus influenzae PittHH], ... gi\|145631091 - gi\|145631091\|ref\|ZP_01786866.1\| hypothetical protein CGSHi22421_05515 [Haemophilus influenzae 22.4-2...	118.0	[0..13]	[96..1]
gi\|218367122, gi... - gi\|218560353\|ref\|YP_002393266.1\| hypothetical protein ECS88_3679 [Escherichia coli S88], gi\|21836712... gi\|110643530, gi... - gi\|110643530\|ref\|YP_671260.1\| hypothetical protein ECP_3379 [Escherichia coli 536], gi\|110345122\|gb\|... gi\|218429142, gi... - gi\|218691578\|ref\|YP_002399790.1\| hypothetical protein ECED1_3955 [Escherichia coli ED1a], gi\|2184291... gi\|227839567, gi... - gi\|227883423\|ref\|ZP_04001228.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783956... gi\|91212718, gi\|... - gi\|91212718\|ref\|YP_542704.1\| putative regulator [Escherichia coli UTI89], gi\|91074292\|gb\|ABE09173.1\|... gi\|237703021, gi... - gi\|237703021\|ref\|ZP_04533502.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|26249876, gi\|... - gi\|26249876\|ref\|NP_755916.1\| putative regulator [Escherichia coli CFT073], gi\|26110304\|gb\|AAN82490.1...	106.0	[0..30]	[98..4]
gi\|81247065, gi\|... - gi\|82545654\|ref\|YP_409601.1\| hypothetical protein SBO_3285 [Shigella boydii Sb227], gi\|81247065\|gb\|A...	105.0	[0..30]	[98..4]
gi\|169753401, gi... - gi\|170018473\|ref\|YP_001723427.1\| hypothetical protein EcolC_0422 [Escherichia coli ATCC 8739], gi\|16... gi\|38704158 - gi\|38704158\|ref\|NP_944562.1\| hypothetical protein ECs5530 [Escherichia coli O157:H7 str. Sakai] gi\|157162765, gi... - gi\|157162765\|ref\|YP_001460083.1\| hypothetical protein EcHS_A3485 [Escherichia coli HS], gi\|157068445... gi\|242378818, gi... - gi\|251786545\|ref\|YP_003000849.1\| hypothetical protein B21_03093 [Escherichia coli BL21], gi\|24237881... EG11968 - alternate ribosome-rescue factor A / Alternative stalled-ribosome rescue factor A; binds 50S ribosom... gi\|253322929, gi... - gi\|254289969\|ref\|YP_003055717.1\| hypothetical protein ECD_03142 [Escherichia coli BL21(DE3)], gi\|253... gi\|238902382, gi... - gi\|238902382\|ref\|YP_002928178.1\| hypothetical protein BWG_2982 [Escherichia coli BW2952], gi\|2388604... YHDL_ECOLI - Hypothetical protein yhdL - Escherichia coli gi\|254594628, gi... - gi\|254795228\|ref\|YP_003080065.1\| hypothetical protein ECSP_4262 [Escherichia coli O157:H7 str. TW143... gi\|226838958, gi... - gi\|254038452\|ref\|ZP_04872508.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683895... gi\|253975120, gi... - gi\|254163219\|ref\|YP_003046327.1\| hypothetical protein ECB_03142 [Escherichia coli B str. REL606], gi... gi\|38704158 - gi\|38704158\|ref\|NP_944562.1\| hypothetical protein ECs5530 [Escherichia coli O157:H7] gi\|124498108, gi... - gi\|124532218\|ref\|ZP_01702156.1\| protein of unknown function DUF331 [Escherichia coli B], gi\|12449810... EG11968 - alternate ribosome-rescue factor A / Alternative stalled-ribosome rescue factor A; binds 50S ribosom... gi\|218433996, gi... - gi\|218706899\|ref\|YP_002414418.1\| hypothetical protein ECUMN_3765 [Escherichia coli UMN026], gi\|21843... gi\|74313810, gi\|... - gi\|74313810\|ref\|YP_312229.1\| hypothetical protein SSON_3432 [Shigella sonnei Ss046], gi\|73857287\|gb\|... gi\|170082811, gi... - gi\|170082811\|ref\|YP_001732131.1\| hypothetical protein ECDH10B_3466 [Escherichia coli str. K-12 subst... gi\|188491128, gi... - gi\|188495929\|ref\|ZP_03003199.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849112... gi\|89110719, gi\|... - gi\|89110719\|ref\|AP_004499.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|195939839 - gi\|195939839\|ref\|ZP_03085221.1\| hypothetical protein EscherichcoliO157_26146 [Escherichia coli O157:... gi\|218696984, gi... - gi\|218696984\|ref\|YP_002404651.1\| hypothetical protein EC55989_3708 [Escherichia coli 55989], gi\|2183...	104.0	[0..30]	[98..4]
gi\|16421967, gi\|... - gi\|16766700\|ref\|NP_462315.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16421967\|... lcl\|NC_016856.1_... - [gene=STM14_4114] [protein=putative cytoplasmic protein] [protein_id=YP_005239601.1] [location=compl...	100.0	[0..30]	[95..4]
gi\|144979024, gi... - gi\|145628554\|ref\|ZP_01784354.1\| hypothetical protein CGSHi22121_06050 [Haemophilus influenzae 22.1-2... Y235_HAEIN, YHDL... - (P44588) Hypothetical protein HI0235, Uncharacterized protein HI_0235 OS=Haemophilus influenzae GN=H... gi\|53733154 - gi\|53733154\|ref\|ZP_00156076.2\| COG3036: Uncharacterized protein conserved in bacteria [Haemophilus i... gi\|68248844, gi\|... - gi\|68248844\|ref\|YP_247956.1\| hypothetical protein NTHI0342 [Haemophilus influenzae 86-028NP], gi\|680... ARFA_HAEIN - Alternative ribosome-rescue factor A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20... gi\|145639852, gi... - gi\|145639852\|ref\|ZP_01795453.1\| hypothetical protein CGSHiII_03595 [Haemophilus influenzae PittII], ... gi\|145635142, gi... - gi\|145635142\|ref\|ZP_01790847.1\| hypothetical protein CGSHiAA_01685 [Haemophilus influenzae PittAA], ... gi\|144986675, gi... - gi\|145632480\|ref\|ZP_01788214.1\| hypothetical protein CGSHi3655_01659 [Haemophilus influenzae 3655], ...	97.0	[0..13]	[84..1]
gi\|152979695, gi... - gi\|75429863\|ref\|ZP_00732481.1\| conserved hypothetical protein [Actinobacillus succinogenes 130Z], gi...	95.0	[0..23]	[95..17]
gi\|116220998, gi... - gi\|75820411\|ref\|ZP_00750459.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler...	94.0	[0..13]	[74..17]
gi\|148874016, gi... - gi\|153830521\|ref\|ZP_01983188.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887401... gi\|153825077, gi... - gi\|153825077\|ref\|ZP_01977744.1\| conserved hypothetical protein, putative [Vibrio cholerae MZO-2], gi... gi\|254846321, gi... - gi\|75830967\|ref\|ZP_00760236.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|75825808, gi\|... - gi\|75825808\|ref\|ZP_00755244.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|121549019, gi... - gi\|121586722\|ref\|ZP_01676505.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215490... gi\|153214428, gi... - gi\|153214428\|ref\|ZP_01949399.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124115377\|... gi\|124118959, gi... - gi\|153222322\|ref\|ZP_01953072.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241189... gi\|227811809, gi... - gi\|227811809\|ref\|YP_002811819.1\| hypothetical protein VCM66_A0181 [Vibrio cholerae M66-2], gi\|227010... gi\|9657577, gi\|1... - gi\|9657577\|gb\|AAF96098.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N1696... gi\|126512607, gi... - gi\|153816804\|ref\|ZP_01969471.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|11354762 - pir\|\|B82489 conserved hypothetical protein VCA0185 [imported] - Vibrio cholerae (strain N16961 serog...	93.0	[0..13]	[74..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSDVFYDPE EIMAKKTNQV PIAENSQTAY LHNRGTIQDN AVKALLRTPL FRSRIEKKLK  60
   61 GKGSYQRKAK HAGRYFEKPD DKSFGYKSFI IGFLLGPAYL L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.598	a.66.1	Transducin (alpha subunit), insertion domain
View	Download	0.598	a.66.1	Transducin (alpha subunit), insertion domain
View	Download	0.566	a.66.1	Transducin (alpha subunit), insertion domain
View	Download	0.562	a.24.3	Cytochromes
View	Download	0.526	a.66.1	Transducin (alpha subunit), insertion domain
View	Download	0.508	d.6.1	Prion-like
View	Download	0.450	a.134.1	Fungal elicitin
View	Download	0.406	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.343	a.39.2	Insect pheromon/odorant-binding proteins
View	Download	0.269	a.7.1	Spectrin repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits