YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12722304, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12722304, gi|....

Description	E-value	Query Range	Subject Range
GCST_THETN - Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1 GCST_CALS4 - Aminomethyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM... gi\|214035115, gi... - gi\|254478933\|ref\|ZP_05092294.1\| glycine cleavage system T protein [Carboxydibrachium pacificum DSM 1...	313.0	[0..2]	[288..37]
GCST_THEPX - Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1 gi\|242256016, gi... - gi\|242256016\|ref\|ZP_04800914.1\| glycine cleavage system T protein [Thermoanaerobacter sp. X513], gi\|...	301.0	[0..2]	[278..31]
GCST_THEP3 - Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3... gi\|241885038, gi... - gi\|241902576\|ref\|ZP_04787309.1\| glycine cleavage system T protein [Thermoanaerobacter brockii subsp....	300.0	[0..2]	[278..31]
GCST_HALOH - Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV...	299.0	[0..2]	[291..28]
GCST_DESHD - Aminomethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=gcvT PE=3 SV=1	297.0	[0..2]	[291..31]
GCST_DESHY - Aminomethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=gcvT PE=3 SV=1	297.0	[0..2]	[291..31]
gi\|228648434, gi... - gi\|229135049\|ref\|ZP_04263854.1\| Aminomethyltransferase [Bacillus cereus BDRD-ST196], gi\|228648434\|gb... gi\|229013446, gi... - gi\|229013446\|ref\|ZP_04170583.1\| Aminomethyltransferase [Bacillus mycoides DSM 2048], gi\|228747858\|gb... GCST_BACWK - Aminomethyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=gcvT PE=3 SV=1	295.0	[0..2]	[291..31]
GCST_BACTN - Aminomethyltransferase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / ... gi\|251837663, gi... - gi\|253572763\|ref\|ZP_04850163.1\| glycine cleavage system aminomethyltransferase T [Bacteroides sp. 1_... GCST_BACTN - Aminomethyltransferase OS=Bacteroides thetaiotaomicron GN=gcvT PE=3 SV=1	293.0	[0..1]	[291..27]
GCST_BACHD - Aminomethyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 915... GCST_BACHD - Aminomethyltransferase OS=Bacillus halodurans GN=gcvT PE=3 SV=1	293.0	[0..2]	[291..31]
GCST_BACCN - Aminomethyltransferase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98)...	292.0	[0..2]	[291..31]

Back

Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYSLLTETQ AHVVCDLQQY TLLEIQGEDA EKYLQGQLTC DVNKLAVGES TLAAHCDAKG  60
   61 KINSLFRLIR TAPQTFYLLV KKGLLPTALD QLKKYAVFSK VTFTPCDWQI IGLAGEKIIN 120
  121 ACDEIDAQIR VTLSSQQPRV ILIHPTALDL QANASHVVWD LLDIQDGIPL LSPETQAEFI 180
  181 PQALNLQCLE HAISFQKGCY IGQEIVARAK YRGANKRAMF TFVAQSQEMP NIKSEVEMQL 240
  241 ENHWRKTGNI ISAVNFEGTL WLQVVLNNQL EEDVQFRLSE HTALTRFPLP YTLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	1vlyA
Description:	Crystal structure of Unknown protein from 2D-page (Spot PR51) (b2898) from Escherichia coli k12 at 1.30 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	2.71219746860743	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	2.63021060808724	bayes_pls_golite062009
catalytic activity	1.65079399897053	bayes_pls_golite062009
transferase activity	1.3676947912529	bayes_pls_golite062009
binding	0.132837587724643	bayes_pls_golite062009
aminomethyltransferase activity	0.0576067162699821	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: