YRC Public Data Repository - Protein Structure Prediction

Protein:	GMHBB_PASMU
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GMHBB_PASMU.

Description	E-value	Query Range	Subject Range
gi\|75428804, gi\|... - gi\|75428804\|ref\|ZP_00731919.1\| histidinol phosphatase and related phosphatases [Actinobacillus succi...	159.0	[0..1]	[183..1]
gi\|32030676 - gi\|32030676\|ref\|ZP_00133476.1\| COG0241: Histidinol phosphatase and related phosphatases [Haemophilus...	156.0	[0..1]	[183..3]
gi\|113461668, gi... - gi\|113461668\|ref\|YP_719737.1\| D,D-heptose 1,7-bisphosphate phosphatase [Haemophilus somnus 129PT], g...	156.0	[0..1]	[183..1]
gi\|229847523, gi... - gi\|229847523\|ref\|ZP_04467618.1\| D,D-heptose 1,7-bisphosphate phosphatase [Haemophilus influenzae 7P4... gi\|148715678, gi... - gi\|148825518\|ref\|YP_001290271.1\| D,D-heptose 1,7-bisphosphate phosphatase [Haemophilus influenzae Pi... gi\|42629112 - gi\|42629112\|ref\|ZP_00154661.1\| COG0241: Histidinol phosphatase and related phosphatases [Haemophilus...	154.0	[0..1]	[183..1]
gi\|52306542, gi\|... - gi\|52424490\|ref\|YP_087627.1\| D,D-heptose 1,7-bisphosphate phosphatase [Mannheimia succiniciproducens...	153.0	[0..2]	[183..8]
GMHB_HAEIN - D,D-heptose 1,7-bisphosphate phosphatase OS=Haemophilus influenzae GN=gmhB PE=3 SV=1 GMHBB_HAEIN - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase OS=Haemophilus influenzae (strain ATCC...	153.0	[0..1]	[183..1]
gi\|42631047 - gi\|42631047\|ref\|ZP_00156585.1\| COG0241: Histidinol phosphatase and related phosphatases [Haemophilus... gi\|145640063, gi... - gi\|145640063\|ref\|ZP_01795659.1\| D,D-heptose 1,7-bisphosphate phosphatase [Haemophilus influenzae Pit... gi\|144980173, gi... - gi\|145628398\|ref\|ZP_01784199.1\| D,D-heptose 1,7-bisphosphate phosphatase [Haemophilus influenzae 22....	152.0	[0..1]	[183..1]
gi\|144982720 - gi\|144982720\|gb\|EDJ90252.1\| D,D-heptose 1,7-bisphosphate phosphatase [Haemophilus influenzae R3021] gi\|148827911, gi... - gi\|148827911\|ref\|YP_001292664.1\| D,D-heptose 1,7-bisphosphate phosphatase [Haemophilus influenzae Pi... gi\|68249322, gi\|... - gi\|68249322\|ref\|YP_248434.1\| D,D-heptose 1,7-bisphosphate phosphatase [Haemophilus influenzae 86-028... gi\|145631641 - gi\|145631641\|ref\|ZP_01787405.1\| D,D-heptose 1,7-bisphosphate phosphatase [Haemophilus influenzae 22....	152.0	[0..1]	[183..1]
gi\|32035325 - gi\|32035325\|ref\|ZP_00135321.1\| COG0241: Histidinol phosphatase and related phosphatases [Actinobacil... gi\|126097113, gi... - gi\|126208321\|ref\|YP_001053546.1\| D,D-heptose 1,7-bisphosphate phosphatase [Actinobacillus pleuropneu...	149.0	[0..1]	[180..1]
GMHB_HAEDU - D,D-heptose 1,7-bisphosphate phosphatase OS=Haemophilus ducreyi GN=gmhB PE=3 SV=1 GMHBB_HAEDU - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase OS=Haemophilus ducreyi (strain 35000HP...	147.0	[0..2]	[179..3]

Back

Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAIFLDRD GTLNIDHGYV HEIDQFQFID GSIEALQQLK AMGYLLVLVT NQSGIARGYF  60
   61 SEDQFLQLTE WMDWSLADRG VDLDGIYYCP HHTEGKGEYC QDCDCRKPKP GMLLQAIKEL 120
  121 NIDPNTSFMV GDKVEDMLAG KGAKIKNTVL VKTGKPITED GKKQANYVLE SIADLPKLIK 180
  181 GLKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	2gmwA
Description:	No description for 2gmwA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.92340854382984	bayes_pls_golite062009
imidazoleglycerol-phosphate dehydratase activity	0.35884565083558	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: