YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15603430, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15603430, gi|....

Description	E-value	Query Range	Subject Range
gi\|170718517, gi... - gi\|32028645\|ref\|ZP_00131801.1\| COG3076: Uncharacterized protein conserved in bacteria [Haemophilus s... gi\|23468052, gi\|... - gi\|23468052\|ref\|ZP_00123623.1\| COG3076: Uncharacterized protein conserved in bacteria [Haemophilus s...	184.0	[0..1]	[131..1]
gi\|148826657, gi... - gi\|148826657\|ref\|YP_001291410.1\| hypothetical protein CGSHiEE_08640 [Haemophilus influenzae PittEE],... gi\|68057474, gi\|... - gi\|68249275\|ref\|YP_248387.1\| hypothetical protein NTHI0823 [Haemophilus influenzae 86-028NP], gi\|680...	176.0	[0..1]	[117..1]
gi\|148719114, gi... - gi\|148827872\|ref\|YP_001292625.1\| hypothetical protein CGSHiGG_06790 [Haemophilus influenzae PittGG],... gi\|42628986 - gi\|42628986\|ref\|ZP_00154537.1\| COG3076: Uncharacterized protein conserved in bacteria [Haemophilus i...	174.0	[0..1]	[122..1]
gi\|126207581, gi... - gi\|126207581\|ref\|YP_001052806.1\| hypothetical protein APL_0093 [Actinobacillus pleuropneumoniae L20]... gi\|32035823 - gi\|32035823\|ref\|ZP_00135659.1\| COG3076: Uncharacterized protein conserved in bacteria [Actinobacillu... gi\|165875651, gi... - gi\|165975550\|ref\|YP_001651143.1\| hypothetical protein APJL_0093 [Actinobacillus pleuropneumoniae ser... gi\|190149361, gi... - gi\|190149361\|ref\|YP_001967886.1\| hypothetical protein APP7_0092 [Actinobacillus pleuropneumoniae ser...	174.0	[0..1]	[126..1]
gi\|77978584, gi\|... - gi\|77978584\|ref\|ZP_00834011.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia inte...	173.0	[0..4]	[117..29]
gi\|52308304, gi\|... - gi\|52426252\|ref\|YP_089389.1\| hypothetical protein MS2197 [Mannheimia succiniciproducens MBEL55E], gi...	173.0	[0..1]	[122..1]
Y700_HAEIN, YJGD... - (P44831) Protein HI0700, Uncharacterized protein HI_0700 OS=Haemophilus influenzae GN=HI_0700 PE=1 S... RRAB_HAEIN - Regulator of ribonuclease activity B OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20...	173.0	[0..1]	[117..1]
gi\|77960005 - gi\|77960005\|ref\|ZP_00823909.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia moll...	173.0	[0..4]	[117..29]
gi\|77974069, gi\|... - gi\|77974069\|ref\|ZP_00829612.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia fred...	173.0	[0..4]	[116..29]
gi\|42630963 - gi\|42630963\|ref\|ZP_00156501.1\| COG3076: Uncharacterized protein conserved in bacteria [Haemophilus i... gi\|144982827 - gi\|144982827\|gb\|EDJ90349.1\| hypothetical protein CGSHi22421_09885 [Haemophilus influenzae R3021] gi\|145639459, gi... - gi\|145639459\|ref\|ZP_01795064.1\| hypothetical protein CGSHiII_04777 [Haemophilus influenzae PittII], ... gi\|145631558 - gi\|145631558\|ref\|ZP_01787325.1\| hypothetical protein CGSHi22421_09885 [Haemophilus influenzae 22.4-2...	172.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDFNALKTE TREIITDLLN DGSDPDALYI IEHHIVHHDF DKLEKIALDA FKLGYEVSEA  60
   61 EEFEDEKGHV IFCFDIISEV KLTPEIIDAQ QKELLPLVEK CGGTYDGWGT YFEDPNAEDD 120
  121 EYGEDGEFFD DELDDELNER H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.221849
Match:	1nxiA
Description:	Hypothetical protein VC0424
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits