YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15603400, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15603400, gi|....

Description	E-value	Query Range	Subject Range
gi\|27479658 - gi\|27479658\|gb\|AAO17185.1\| HpaI [Photorhabdus luminescens]	215.0	[0..1]	[250..4]
HPCH_SHIFL - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Shigella flexneri GN=hpcH PE=3 SV=1 gi\|24054912, gi\|... - gi\|24115578\|ref\|NP_710088.1\| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Shigella flexneri 2a s... gi\|30043854, gi\|... - gi\|30065590\|ref\|NP_839761.1\| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Shigella flexneri 2a s...	214.0	[0..1]	[237..1]
gi\|193063726, gi... - gi\|75258430\|ref\|ZP_00729861.1\| COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia...	211.0	[0..1]	[237..1]
EG14083 - 2-keto-3-deoxy-L-rhamnonate aldolase / 2-keto-3-deoxy-L-rhamnonate aldolase EG14083 - 2-keto-3-deoxy-L-rhamnonate aldolase / 2-keto-3-deoxy-L-rhamnonate aldolase gi\|253974157, gi... - gi\|254162256\|ref\|YP_003045364.1\| predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escheric... YFAU_ECOLI - Hypothetical protein yfaU - Escherichia coli gi\|75512721, gi\|... - gi\|75512721\|ref\|ZP_00735223.1\| COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia... gi\|124501885, gi... - gi\|124526414\|ref\|ZP_01698367.1\| 2-dehydro-3-deoxyglucarate aldolase [Escherichia coli B], gi\|1245018... gi\|254289017, gi... - gi\|254289017\|ref\|YP_003054765.1\| predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escheric... gi\|89109062, gi\|... - gi\|89109062\|ref\|AP_002842.1\| predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia ... gi\|251785606, gi... - gi\|251785606\|ref\|YP_002999910.1\| hypothetical protein B21_02130 [Escherichia coli BL21], gi\|24237787... RHMA_ECOBW - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rhmA PE=3... RHMA_ECOLC - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=r... gi\|83588231, gi\|... - gi\|83588231\|ref\|ZP_00926856.1\| COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia... RHMA_ECODH - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain K12 / DH10B) GN=rhmA PE=3 SV=1 RHMA_ECOHS - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O9:H4 (strain HS) GN=rhmA PE=3 SV=1	210.0	[0..1]	[262..5]
gi\|36784398, gi\|... - gi\|37524972\|ref\|NP_928316.1\| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Photorhabdus luminesce...	210.0	[0..1]	[252..4]
HPCH_SHISS - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Shigella sonnei (strain Ss046) GN=hpcH PE=3 SV=1	210.0	[0..1]	[258..1]
HPCH_ECOHS - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Escherichia coli O9:H4 (strain HS) GN=hpcH PE=3 SV=1	210.0	[0..1]	[258..1]
HPCH_ECOLX - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Escherichia coli GN=hpcH PE=1 SV=1 HPCH_ECOLC - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crook... gi\|75515540, gi\|... - gi\|75515540\|ref\|ZP_00737697.1\| COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia... HPCH_ECOSE - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Escherichia coli (strain SE11) GN=hpcH PE=3 SV=1 gi\|124498498, gi... - gi\|124531566\|ref\|ZP_01701797.1\| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia coli B]...	210.0	[0..1]	[258..1]
RHMA_ECOUT - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain UTI89 / UPEC) GN=rhmA PE=3 SV=1 gi\|227835654, gi... - gi\|227887304\|ref\|ZP_04005109.1\| aldolase [Escherichia coli 83972], gi\|227835654\|gb\|EEJ46120.1\| aldol... RHMA_ECO81 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O81 (strain ED1a) GN=rhmA PE=3 SV=1 RHMA_ECOK1 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O1:K1 / APEC GN=rhmA PE=3 SV=1 gi\|226901089, gi... - gi\|237704723\|ref\|ZP_04535204.1\| 2-keto-3-deoxy-L-rhamnonate aldolase [Escherichia sp. 3_2_53FAA], gi... RHMA_ECOL6 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... RHMA_ECOL6, KDRA... - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O6 GN=rhmA PE=3 SV=1, 2-keto-3-deoxy-L-rham... RHMA_ECO45 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhmA PE=3 SV...	209.0	[0..1]	[262..5]
HPCH_SHIB3 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS5...	209.0	[0..1]	[258..1]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNHFKQALK EKKPQIGLWV GLADGYACEL AATAGFDWLL LDGEHAPNDL RTLLHQLQTL  60
   61 AAYPTTPIIR PVIGQTHTIK QLLDIGAQTL LVPMVETAEQ ARELVKAIHY PPKGVRGVGS 120
  121 ALARASRWNS IPHYLQQADE EICLLVQVEN KTGLQNLKEI AEVDGVDGVF IGPADLSASL 180
  181 GHLGNPSHPE VQQAIEQAIA TICAADKAAG ILYADEKMAK HYLALGCTFV AVGVDTSLLM 240
  241 RALNDLSQKF KSSNALENTA SANQIY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	2v5jA
Description:	No description for 2v5jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits