YRC Public Data Repository - Protein Structure Prediction

Protein:	DEOD_PASMU
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEOD_PASMU.

Description	E-value	Query Range	Subject Range
DEOD_PHOLL - Purine nucleoside phosphorylase deoD-type OS=Photorhabdus luminescens subsp. laumondii GN=deoD PE=3 ... DEOD_PHOLL - Purine nucleoside phosphorylase DeoD-type OS=Photorhabdus luminescens subsp. laumondii (strain DSM 1...	240.0	[0..2]	[237..3]
gi\|77973607 - gi\|77973607\|ref\|ZP_00829153.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia frederiksenii ATCC...	240.0	[0..2]	[238..3]
gi\|77959706 - gi\|77959706\|ref\|ZP_00823723.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia bercovieri ATCC 43...	239.0	[0..2]	[238..3]
DEOD_XENNA - Purine nucleoside phosphorylase DeoD-type OS=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 /... DEOD_XENNE - Purine nucleoside phosphorylase deoD-type OS=Xenorhabdus nematophilus GN=deoD PE=3 SV=1	239.0	[0..2]	[237..3]
gi\|77960324 - gi\|77960324\|ref\|ZP_00824201.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia mollaretii ATCC 43...	239.0	[0..2]	[238..3]
DEOD_MANSM - Purine nucleoside phosphorylase DeoD-type OS=Mannheimia succiniciproducens (strain MBEL55E) GN=deoD ...	238.0	[0..1]	[238..1]
DEOD_HAES1 - Purine nucleoside phosphorylase DeoD-type OS=Haemophilus somnus (strain 129Pt) GN=deoD PE=3 SV=1	237.0	[0..1]	[236..1]
DEOD_YERPB - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) ... DEOD_YERP3 - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31... DEOD_YERPY - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII)... DEOD_YERPS - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype I (strain IP32953)... DEOD_YERPS - Purine nucleoside phosphorylase deoD-type OS=Yersinia pseudotuberculosis GN=deoD PE=3 SV=1	236.0	[0..2]	[238..3]
DEOD_PECAS - Purine nucleoside phosphorylase DeoD-type OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BA... DEOD_ERWCT - Purine nucleoside phosphorylase deoD-type OS=Erwinia carotovora subsp. atroseptica GN=deoD PE=3 SV=1	236.0	[0..2]	[237..3]
DEOD_YERPE - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis GN=deoD PE=3 SV=1 gi\|167470356 - gi\|167470356\|ref\|ZP_02335060.1\| purine nucleoside phosphorylase [Yersinia pestis FV-1] DEOD_YERPG - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis bv. Antiqua (strain Angola) GN=deoD PE=... gi\|115346250, gi... - gi\|218927639\|ref\|YP_002345514.1\| purine nucleoside phosphorylase [Yersinia pestis CO92], gi\|16120771... gi\|165927348, gi... - gi\|165927348\|ref\|ZP_02223180.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|166008763, gi... - gi\|166008763\|ref\|ZP_02229661.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Antiqua str.... gi\|166206924, gi... - gi\|166212178\|ref\|ZP_02238213.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Antiqua str.... gi\|167400482, gi... - gi\|167400482\|ref\|ZP_02305991.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Antiqua str.... gi\|166963063, gi... - gi\|167419069\|ref\|ZP_02310822.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|167054958, gi... - gi\|167426035\|ref\|ZP_02317788.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Mediaevalis ... DEOD_YERPA - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=deoD PE... DEOD_YERPN - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=deoD P... gi\|229842403, gi... - gi\|229842403\|ref\|ZP_04462558.1\| purine-nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|229840324, gi... - gi\|229840324\|ref\|ZP_04460483.1\| purine-nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|150260522, gi... - gi\|150260522\|ref\|ZP_01917250.1\| purine nucleoside phosphorylase [Yersinia pestis CA88-4125], gi\|1492... gi\|229705922, gi... - gi\|229836979\|ref\|ZP_04457144.1\| purine-nucleoside phosphorylase [Yersinia pestis Pestoides A], gi\|22... DEOD_YERPP - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis (strain Pestoides F) GN=deoD PE=3 SV=1 gi\|165915653, gi... - gi\|89104403\|ref\|ZP_01176947.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia pestis biovar Orie...	235.0	[0..2]	[238..3]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPHINAPAG AFADVVLMPG DPLRAKYIAE TFLQDVKEIT NVRNMLGFTG TYKGRKISVM  60
   61 GHGMGIPSCS IYTKELITEY GVKKIIRVGS CGAVRMDVKL RDVVIGFGAC TDSKVNRIRF 120
  121 KNHDFAAIAD FDMTMAAVQA AKAKGLNVHV GNLFSADLFY TPDVEMFDVM EKYGILGVEM 180
  181 EAAGIYGVAA EFGAKALTIC TVSDHIRTHE QTTPEERQLT FNDMIEIALE SVLIGDNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.522879
Match:	1a69A
Description:	Purine nucleoside phosphorylase, PNP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
purine-nucleoside phosphorylase activity	3.68206997938506	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.01261001022129	bayes_pls_golite062009
S-methyl-5-thioadenosine phosphorylase activity	1.6959166270803	bayes_pls_golite062009
transferase activity	1.42022417161912	bayes_pls_golite062009
nucleobase binding	1.33291775180025	bayes_pls_golite062009
nucleoside binding	1.11256863177576	bayes_pls_golite062009
purine binding	1.00226077276304	bayes_pls_golite062009
binding	0.192121943858605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: