YRC Public Data Repository - Protein Structure Prediction

Protein:	KITH_PASMU
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KITH_PASMU.

Description	E-value	Query Range	Subject Range
gi\|87312661 - gi\|87312661\|gb\|ABD37696.1\| thymidine kinase [Pasteurella multocida]	295.0	[0..1]	[192..1]
gi\|113460556, gi... - gi\|23466490\|ref\|ZP_00122078.1\| COG1435: Thymidine kinase [Haemophilus somnus 129PT], gi\|113460556\|re...	294.0	[0..1]	[190..1]
gi\|238718765, gi... - gi\|77960742\|ref\|ZP_00824600.1\| COG1435: Thymidine kinase [Yersinia mollaretii ATCC 43969], gi\|238797...	294.0	[0..1]	[190..1]
gi\|77377647 - gi\|77377647\|gb\|ABA70559.1\| thymidine kinase [Yersinia enterocolitica]	293.0	[0..1]	[190..1]
gi\|149746694, gi... - gi\|153839786\|ref\|ZP_01992453.1\| thymidine kinase [Vibrio parahaemolyticus AQ3810], gi\|149746694\|gb\|E... KITH_VIBPA - Thymidine kinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=tdk PE=3 SV=1 KITH_VIBPA - Thymidine kinase OS=Vibrio parahaemolyticus GN=tdk PE=3 SV=1	293.0	[0..1]	[191..1]
gi\|148827720, gi... - gi\|148827720\|ref\|YP_001292473.1\| thymidine kinase [Haemophilus influenzae PittGG], gi\|148718962\|gb\|A... gi\|148715357, gi... - gi\|148825197\|ref\|YP_001289950.1\| thymidine kinase [Haemophilus influenzae PittEE], gi\|148715357\|gb\|A... gi\|145272151, gi... - gi\|145638556\|ref\|ZP_01794165.1\| thymidine kinase [Haemophilus influenzae PittII], gi\|145272151\|gb\|ED... KITH_HAEIN - Thymidine kinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tdk PE=3 S... gi\|145267396, gi... - gi\|145635390\|ref\|ZP_01791092.1\| thymidine kinase [Haemophilus influenzae PittAA], gi\|145267396\|gb\|ED... gi\|144979383, gi... - gi\|145628913\|ref\|ZP_01784713.1\| thymidine kinase [Haemophilus influenzae 22.1-21], gi\|144979383\|gb\|E... gi\|229846612, gi... - gi\|229846612\|ref\|ZP_04466720.1\| thymidine kinase [Haemophilus influenzae 7P49H1], gi\|229810705\|gb\|EE... KITH_HAEIN - Thymidine kinase OS=Haemophilus influenzae GN=tdk PE=3 SV=1	293.0	[0..1]	[191..1]
gi\|144984028 - gi\|144984028\|gb\|EDJ91465.1\| thymidine kinase [Haemophilus influenzae R3021] gi\|145630293 - gi\|145630293\|ref\|ZP_01786074.1\| thymidine kinase [Haemophilus influenzae 22.4-21] KITH_HAEI8 - Thymidine kinase OS=Haemophilus influenzae (strain 86-028NP) GN=tdk PE=3 SV=1	292.0	[0..1]	[191..1]
gi\|108807529, gi... - gi\|108807529\|ref\|YP_651445.1\| thymidine kinase [Yersinia pestis Antiqua], gi\|108779442\|gb\|ABG13500.1... gi\|45441776, gi\|... - gi\|45441776\|ref\|NP_993315.1\| thymidine kinase [Yersinia pestis biovar Microtus str. 91001], gi\|45436... gi\|22126033, gi\|... - gi\|22126033\|ref\|NP_669456.1\| thymidine kinase [Yersinia pestis KIM], gi\|21958984\|gb\|AAM85707.1\|AE013... gi\|16122407, gi\|... - gi\|218929275\|ref\|YP_002347150.1\| thymidine kinase [Yersinia pestis CO92], gi\|16122407\|ref\|NP_405720.... KITH_YERPS - Thymidine kinase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=tdk PE=3 SV=1 gi\|229902102, gi... - gi\|229902102\|ref\|ZP_04517223.1\| thymidine kinase/deoxyuridine kinase [Yersinia pestis Nepal516], gi\|... gi\|167049707, gi... - gi\|167400854\|ref\|ZP_02306360.1\| thymidine kinase [Yersinia pestis biovar Antiqua str. UG05-0454], gi... gi\|166210778, gi... - gi\|166210778\|ref\|ZP_02236813.1\| thymidine kinase [Yersinia pestis biovar Antiqua str. B42003004], gi... gi\|165991644, gi... - gi\|166009089\|ref\|ZP_02229987.1\| thymidine kinase [Yersinia pestis biovar Antiqua str. E1979001], gi\|... gi\|165913913, gi... - gi\|165938252\|ref\|ZP_02226811.1\| thymidine kinase [Yersinia pestis biovar Orientalis str. IP275], gi\|... KITH_YERPE - Thymidine kinase OS=Yersinia pestis GN=tdk PE=3 SV=1 gi\|170024308, gi... - gi\|170024308\|ref\|YP_001720813.1\| thymidine kinase [Yersinia pseudotuberculosis YPIII], gi\|169750842\|... gi\|167470365 - gi\|167470365\|ref\|ZP_02335069.1\| thymidine kinase [Yersinia pestis FV-1] gi\|167424961, gi... - gi\|167424961\|ref\|ZP_02316714.1\| thymidine kinase [Yersinia pestis biovar Mediaevalis str. K1973002],... gi\|166961694, gi... - gi\|167419999\|ref\|ZP_02311752.1\| thymidine kinase [Yersinia pestis biovar Orientalis str. MG05-1020],... gi\|165920681, gi... - gi\|165927415\|ref\|ZP_02223247.1\| thymidine kinase [Yersinia pestis biovar Orientalis str. F1991016], ... gi\|162421742, gi... - gi\|162421742\|ref\|YP_001606618.1\| thymidine kinase [Yersinia pestis Angola], gi\|162354557\|gb\|ABX88505... KITH_YERPS - Thymidine kinase OS=Yersinia pseudotuberculosis GN=tdk PE=3 SV=1 gi\|229897598, gi... - gi\|229897598\|ref\|ZP_04512754.1\| thymidine kinase/deoxyuridine kinase [Yersinia pestis biovar Orienta... gi\|229702147, gi... - gi\|229894854\|ref\|ZP_04510033.1\| thymidine kinase/deoxyuridine kinase [Yersinia pestis Pestoides A], ... gi\|186895476, gi... - gi\|186895476\|ref\|YP_001872588.1\| thymidine kinase [Yersinia pseudotuberculosis PB1/+], gi\|186698502\|... gi\|229688533, gi... - gi\|229898243\|ref\|ZP_04513390.1\| thymidine kinase/deoxyuridine kinase [Yersinia pestis biovar Orienta... gi\|152959418, gi... - gi\|153947923\|ref\|YP_001400939.1\| thymidine kinase [Yersinia pseudotuberculosis IP 31758], gi\|1529594... gi\|149292315, gi... - gi\|149365902\|ref\|ZP_01887937.1\| thymidine kinase [Yersinia pestis CA88-4125], gi\|149292315\|gb\|EDM423... gi\|145209950, gi... - gi\|145598254\|ref\|YP_001162330.1\| thymidine kinase [Yersinia pestis Pestoides F], gi\|145209950\|gb\|ABP...	291.0	[0..1]	[190..1]
gi\|229357462, gi... - gi\|229505239\|ref\|ZP_04394749.1\| thymidine kinase [Vibrio cholerae BX 330286], gi\|229357462\|gb\|EEO223... gi\|227081339, gi... - gi\|227081339\|ref\|YP_002809890.1\| thymidine kinase [Vibrio cholerae M66-2], gi\|227009227\|gb\|ACP05439.... gi\|229515549, gi... - gi\|229515549\|ref\|ZP_04405008.1\| thymidine kinase [Vibrio cholerae TMA 21], gi\|229347318\|gb\|EEO12278.... gi\|229511091, gi... - gi\|229511091\|ref\|ZP_04400570.1\| thymidine kinase [Vibrio cholerae B33], gi\|229351056\|gb\|EEO15997.1\| ... gi\|229529745, gi... - gi\|229529745\|ref\|ZP_04419135.1\| thymidine kinase [Vibrio cholerae 12129(1)], gi\|229333519\|gb\|EEN9900... gi\|229518211, gi... - gi\|229518211\|ref\|ZP_04407655.1\| thymidine kinase [Vibrio cholerae RC9], gi\|229344926\|gb\|EEO09900.1\| ... gi\|153828677, gi... - gi\|153828677\|ref\|ZP_01981344.1\| thymidine kinase [Vibrio cholerae 623-39], gi\|148875830\|gb\|EDL73965.... gi\|254843999, gi... - gi\|254848294\|ref\|ZP_05237644.1\| thymidine kinase [Vibrio cholerae MO10], gi\|254843999\|gb\|EET22413.1\|... KITH_VIBCH - Thymidine kinase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=tdk PE=... gi\|227013033, gi... - gi\|227117583\|ref\|YP_002819479.1\| thymidine kinase [Vibrio cholerae O395], gi\|227013033\|gb\|ACP09243.1... gi\|229370913, gi... - gi\|229608258\|ref\|YP_002878906.1\| thymidine kinase [Vibrio cholerae MJ-1236], gi\|229370913\|gb\|ACQ6133... gi\|124121173, gi... - gi\|153803293\|ref\|ZP_01957879.1\| thymidine kinase [Vibrio cholerae MZO-3], gi\|124121173\|gb\|EAY39916.1... gi\|124117173, gi... - gi\|153226284\|ref\|ZP_01954898.1\| thymidine kinase [Vibrio cholerae MAK 757], gi\|124117173\|gb\|EAY35916... KITH_VIBCH - Thymidine kinase OS=Vibrio cholerae GN=tdk PE=3 SV=1	291.0	[0..1]	[191..1]
gi\|1246361 - gi\|1246361\|gb\|AAA93511.1\| thymidine:thymidylate kinase:zeocin resistance fusion protein [Cloning vec...	291.0	[0..1]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLYFYYST MNAGKSTTLL QSSYNYQERD MNTLVYTAAI DDRFGVGKVT SRIGISQEAQ  60
   61 LFHKESDLFV EIAQHLQQQP LHCILVDEAQ FLTKTQVYQL SEVVDKLKIP VLCYGLRTDF 120
  121 QAELFEGSKY LLAWADQLEE LKTICYCGRK ANFVLRLNDK GEVVRDGAQI QIGGNDSYLS 180
  181 VCRLHYKEKI AL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.0
Match:	2ja1A
Description:	No description for 2ja1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits