YRC Public Data Repository - Protein Structure Prediction

Protein:	RS6_PASMU
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS6_PASMU.

Description	E-value	Query Range	Subject Range
RS6_MANSM - 30S ribosomal protein S6 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpsF PE=3 SV=1	169.0	[0..1]	[125..1]
RS6_HAEIN - 30S ribosomal protein S6 OS=Haemophilus influenzae GN=rpsF PE=3 SV=1 gi\|145638543, gi... - gi\|145638543\|ref\|ZP_01794152.1\| 30S ribosomal protein S6 [Haemophilus influenzae PittII], gi\|1452721... gi\|145269358, gi... - gi\|145637412\|ref\|ZP_01793071.1\| 30S ribosomal protein S6 [Haemophilus influenzae PittHH], gi\|1452693... gi\|145267378, gi... - gi\|145635372\|ref\|ZP_01791074.1\| 30S ribosomal protein S6 [Haemophilus influenzae PittAA], gi\|1452673... gi\|144985870, gi... - gi\|145633501\|ref\|ZP_01789230.1\| 30S ribosomal protein S6 [Haemophilus influenzae 3655], gi\|144985870... gi\|145275106, gi... - gi\|145640520\|ref\|ZP_01796104.1\| 30S ribosomal protein S6 [Haemophilus influenzae R3021], gi\|14563027... gi\|145628928, gi... - gi\|145628928\|ref\|ZP_01784728.1\| 30S ribosomal protein S6 [Haemophilus influenzae 22.1-21], gi\|144979... gi\|42629995 - gi\|42629995\|ref\|ZP_00155540.1\| COG0360: Ribosomal protein S6 [Haemophilus influenzae R2846] gi\|53733320 - gi\|53733320\|ref\|ZP_00156367.2\| COG0360: Ribosomal protein S6 [Haemophilus influenzae R2866] RS6_HAEIN - 30S ribosomal protein S6 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rp... gi\|229812543, gi... - gi\|229844294\|ref\|ZP_04464434.1\| 30S ribosomal protein S6 [Haemophilus influenzae 6P18H1], gi\|2298125... RS6_HAEIG - 30S ribosomal protein S6 OS=Haemophilus influenzae (strain PittGG) GN=rpsF PE=3 SV=1 gi\|229846630, gi... - gi\|229846630\|ref\|ZP_04466738.1\| 30S ribosomal protein S6 [Haemophilus influenzae 7P49H1], gi\|2298107... gi\|145640520, gi... - gi\|145640520\|ref\|ZP_01796104.1\| 30S ribosomal protein S6 [Haemophilus influenzae R3021], gi\|14498400... RS6_HAEI8 - 30S ribosomal protein S6 OS=Haemophilus influenzae (strain 86-028NP) GN=rpsF PE=3 SV=1	168.0	[0..1]	[125..1]
RS6_HISS2 - 30S ribosomal protein S6 OS=Histophilus somni (strain 2336) GN=rpsF PE=3 SV=1	167.0	[0..1]	[125..1]
RS6_HAES1 - 30S ribosomal protein S6 OS=Haemophilus somnus (strain 129Pt) GN=rpsF PE=3 SV=1	167.0	[0..1]	[125..1]
gi\|166961388, gi... - gi\|167420582\|ref\|ZP_02312335.1\| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. MG05-10... gi\|229695559, gi... - gi\|229839193\|ref\|ZP_04459352.1\| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ... gi\|167423107, gi... - gi\|167423107\|ref\|ZP_02314860.1\| ribosomal protein S6 [Yersinia pestis biovar Mediaevalis str. K19730... gi\|229836649, gi... - gi\|229836649\|ref\|ZP_04456815.1\| 30S ribosomal subunit protein S6 [Yersinia pestis Pestoides A], gi\|2... RS6_YERPY - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rpsF PE=3 SV=... RS6_YERPB - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpsF PE=3 SV=1 gi\|165919840, gi... - gi\|165928153\|ref\|ZP_02223985.1\| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. F199101... gi\|165989687, gi... - gi\|166011303\|ref\|ZP_02232201.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. E1979001],... gi\|166214044, gi... - gi\|166214044\|ref\|ZP_02240079.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. B42003004]... gi\|167049370, gi... - gi\|167401345\|ref\|ZP_02306845.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. UG05-0454]... RS6_YERE8 - 30S ribosomal protein S6 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8... gi\|165937530, gi... - gi\|89102329\|ref\|ZP_01174971.1\| COG0360: Ribosomal protein S6 [Yersinia pestis biovar Orientalis str.... RS6_YERPA - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpsF PE=3 SV=1 RS6_YERPN - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpsF PE=3 SV=1 gi\|149288953, gi... - gi\|153997316\|ref\|ZP_02022416.1\| 30S ribosomal protein S6 [Yersinia pestis CA88-4125], gi\|149288953\|g... gi\|45435253, gi\|... - gi\|45440396\|ref\|NP_991935.1\| 30S ribosomal protein S6 [Yersinia pestis biovar Microtus str. 91001], ... gi\|22124559, gi\|... - gi\|22124559\|ref\|NP_667982.1\| 30S ribosomal protein S6 [Yersinia pestis KIM], gi\|21957359\|gb\|AAM84233... gi\|15981463, gi\|... - gi\|218930553\|ref\|YP_002348428.1\| 30S ribosomal protein S6 [Yersinia pestis CO92], gi\|16123685\|ref\|NP... RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rpsF PE=3 SV=... gi\|77961292 - gi\|77961292\|ref\|ZP_00825133.1\| COG0360: Ribosomal protein S6 [Yersinia mollaretii ATCC 43969] RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis GN=rpsF PE=3 SV=1 gi\|77958749 - gi\|77958749\|ref\|ZP_00822777.1\| COG0360: Ribosomal protein S6 [Yersinia bercovieri ATCC 43970] RS6_YERPG - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rpsF PE=3 SV=1 RS6_YERP3 - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpsF PE=3... RS6_YERPE - 30S ribosomal protein S6 OS=Yersinia pestis GN=rpsF PE=3 SV=1 gi\|77973976 - gi\|77973976\|ref\|ZP_00829519.1\| COG0360: Ribosomal protein S6 [Yersinia frederiksenii ATCC 33641] gi\|77977622 - gi\|77977622\|ref\|ZP_00833066.1\| COG0360: Ribosomal protein S6 [Yersinia intermedia ATCC 29909] gi\|229899757, gi... - gi\|229899757\|ref\|ZP_04514898.1\| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ...	165.0	[0..1]	[124..1]
gi\|33566505 - gi\|33566505\|emb\|CAE37761.1\| 30s ribosomal protein s6 [Bordetella parapertussis] gi\|33597054 - gi\|33597054\|ref\|NP_884697.1\| 30S ribosomal protein S6 [Bordetella parapertussis 12822] gi\|33568499, gi\|... - gi\|33600899\|ref\|NP_888459.1\| 30S ribosomal protein S6 [Bordetella bronchiseptica RB50], gi\|33568499\|...	163.0	[0..1]	[107..32]
RS6_PHOLL - 30S ribosomal protein S6 OS=Photorhabdus luminescens subsp. laumondii GN=rpsF PE=3 SV=1 RS6_PHOLL - 30S ribosomal protein S6 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565...	161.0	[0..1]	[125..1]
RS6_DECAR - 30S ribosomal protein S6 OS=Dechloromonas aromatica (strain RCB) GN=rpsF PE=3 SV=1	160.0	[0..1]	[113..1]
EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts RS6_ECOLI - 30S ribosomal protein S6 [Contains: 30S ribosomal protein S6, fully modified isoform; 30S ribosomal ... EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts	160.0	[0..1]	[124..1]
RS6_ACTSZ - 30S ribosomal protein S6 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpsF PE=3 SV=1	160.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHYEIVFMV HPDQSEQVPG MIERYTGSVK EAGGQVHRLE DWGRRQLAYP INKLHKAHYV  60
   61 LMNVEAPQEV IDELETTFRY NDAVLRNVII RTKHAVTEAS PMVKAKDDRK ALAEVENNDF 120
  121 EDAEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1p6gF
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.76170790689216	bayes_pls_golite062009
structural molecule activity	3.47672166437086	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: