YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15602994, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15602994, gi|....

Description	E-value	Query Range	Subject Range
gi\|53732892 - gi\|53732892\|ref\|ZP_00155232.2\| COG3036: Uncharacterized protein conserved in bacteria [Haemophilus i... gi\|144983376 - gi\|144983376\|gb\|EDJ90858.1\| hypothetical protein CGSHi22421_05515 [Haemophilus influenzae R3021] gi\|145637212, gi... - gi\|145637212\|ref\|ZP_01792874.1\| hypothetical protein CGSHiHH_00813 [Haemophilus influenzae PittHH], ... gi\|145631091 - gi\|145631091\|ref\|ZP_01786866.1\| hypothetical protein CGSHi22421_05515 [Haemophilus influenzae 22.4-2...	119.0	[0..1]	[79..1]
gi\|52426015, gi\|... - gi\|52426015\|ref\|YP_089152.1\| hypothetical protein MS1960 [Mannheimia succiniciproducens MBEL55E], gi...	100.0	[0..1]	[83..13]
gi\|144979024, gi... - gi\|145628554\|ref\|ZP_01784354.1\| hypothetical protein CGSHi22121_06050 [Haemophilus influenzae 22.1-2... Y235_HAEIN, YHDL... - (P44588) Hypothetical protein HI0235, Uncharacterized protein HI_0235 OS=Haemophilus influenzae GN=H... gi\|53733154 - gi\|53733154\|ref\|ZP_00156076.2\| COG3036: Uncharacterized protein conserved in bacteria [Haemophilus i... gi\|68248844, gi\|... - gi\|68248844\|ref\|YP_247956.1\| hypothetical protein NTHI0342 [Haemophilus influenzae 86-028NP], gi\|680... ARFA_HAEIN - Alternative ribosome-rescue factor A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20... gi\|145639852, gi... - gi\|145639852\|ref\|ZP_01795453.1\| hypothetical protein CGSHiII_03595 [Haemophilus influenzae PittII], ... gi\|145635142, gi... - gi\|145635142\|ref\|ZP_01790847.1\| hypothetical protein CGSHiAA_01685 [Haemophilus influenzae PittAA], ... gi\|144986675, gi... - gi\|145632480\|ref\|ZP_01788214.1\| hypothetical protein CGSHi3655_01659 [Haemophilus influenzae 3655], ...	98.0	[0..1]	[68..1]
gi\|152979695, gi... - gi\|75429863\|ref\|ZP_00732481.1\| conserved hypothetical protein [Actinobacillus succinogenes 130Z], gi...	88.0	[0..13]	[79..23]
gi\|28808719, gi\|... - gi\|28900408\|ref\|NP_800063.1\| hypothetical protein VPA0553 [Vibrio parahaemolyticus RIMD 2210633], gi... gi\|28808719 - gi\|28808719\|dbj\|BAC61896.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	85.0	[0..1]	[58..1]
gi\|27358518, gi\|... - gi\|27366951\|ref\|NP_762478.1\| hypothetical protein VV2_0518 [Vibrio vulnificus CMCP6], gi\|27358518\|gb...	84.0	[0..1]	[58..1]
gi\|116220998, gi... - gi\|75820411\|ref\|ZP_00750459.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler...	84.0	[0..10]	[68..30]
gi\|148874016, gi... - gi\|153830521\|ref\|ZP_01983188.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887401... gi\|153825077, gi... - gi\|153825077\|ref\|ZP_01977744.1\| conserved hypothetical protein, putative [Vibrio cholerae MZO-2], gi... gi\|254846321, gi... - gi\|75830967\|ref\|ZP_00760236.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|75825808, gi\|... - gi\|75825808\|ref\|ZP_00755244.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|121549019, gi... - gi\|121586722\|ref\|ZP_01676505.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215490... gi\|153214428, gi... - gi\|153214428\|ref\|ZP_01949399.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124115377\|... gi\|124118959, gi... - gi\|153222322\|ref\|ZP_01953072.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241189... gi\|227811809, gi... - gi\|227811809\|ref\|YP_002811819.1\| hypothetical protein VCM66_A0181 [Vibrio cholerae M66-2], gi\|227010... gi\|9657577, gi\|1... - gi\|9657577\|gb\|AAF96098.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N1696... gi\|126512607, gi... - gi\|153816804\|ref\|ZP_01969471.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|11354762 - pir\|\|B82489 conserved hypothetical protein VCA0185 [imported] - Vibrio cholerae (strain N16961 serog...	84.0	[0..10]	[68..14]
gi\|75822937, gi\|... - gi\|75822937\|ref\|ZP_00752484.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler...	81.0	[0..10]	[68..3]
gi\|91227012, gi\|... - gi\|91227012\|ref\|ZP_01261549.1\| hypothetical protein V12G01_06606 [Vibrio alginolyticus 12G01], gi\|91...	78.0	[0..1]	[58..1]

Back

Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKQKQPLS AQPYQHSRGV IRDNAICALL HDPLFRQRIE KKRKGKGSYQ RKAKHVGKYF  60
   61 EKPDYKIFDL KDFIIGFFLT IFYNNATHLN SAR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.331	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.302	a.7.1	Spectrin repeat
View	Download	0.265	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.242	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.237	d.50.1	dsRNA-binding domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits