YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15602746, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15602746, gi|....

Description	E-value	Query Range	Subject Range
gi\|113461109, gi... - gi\|113461109\|ref\|YP_719177.1\| nuclease [Haemophilus somnus 129PT], gi\|112823152\|gb\|ABI25241.1\| conse...	184.0	[0..1]	[155..19]
gi\|218692859, gi... - gi\|218692859\|ref\|YP_002405971.1\| putative nuclease [Escherichia coli UMN026], gi\|218350022\|emb\|CAQ87... gi\|83743332, gi\|... - gi\|84060749\|ref\|YP_443951.1\| hypothetical protein O2ColV105 [Escherichia coli], gi\|83743332\|gb\|ABC42...	178.0	[0..11]	[158..32]
Y1296_HAEIN - Uncharacterized endonuclease HI_1296 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20... Y1296_HAEIN, YC9... - (Q57519) Hypothetical protein HI1296 precursor, Uncharacterized endonuclease HI_1296 OS=Haemophilus ...	177.0	[0..1]	[159..1]
gi\|46133540 - gi\|46133540\|ref\|ZP_00157349.2\| COG1525: Micrococcal nuclease (thermonuclease) homologs [Haemophilus ...	176.0	[0..1]	[159..1]
gi\|75235029 - gi\|75235029\|ref\|ZP_00719294.1\| COG1525: Micrococcal nuclease (thermonuclease) homologs [Escherichia ...	175.0	[0..1]	[158..1]
gi\|68250146, gi\|... - gi\|68250146\|ref\|YP_249258.1\| micrococcal nuclease-like protein [Haemophilus influenzae 86-028NP], gi...	175.0	[0..1]	[159..1]
gi\|194358735, gi... - gi\|194446983\|ref\|YP_002038890.1\| nuclease homolog [Salmonella enterica subsp. enterica serovar Kentu... gi\|218931719, gi... - gi\|219586136\|ref\|YP_002456230.1\| nuclease-like protein [Escherichia coli], gi\|218931719\|gb\|ACL12492.... gi\|91206389, gi\|... - gi\|91206389\|ref\|YP_538743.1\| hypothetical protein UTI89_P144 [Escherichia coli UTI89], gi\|91075840\|g... gi\|75238430 - gi\|75238430\|ref\|ZP_00722427.1\| COG1525: Micrococcal nuclease (thermonuclease) homologs [Escherichia ...	173.0	[0..11]	[158..11]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKKLALITL CCLCFTHCSQ ASRSIPCQVI GITDGDTLTC LLQNKKSLRV RLAEIDAPEK  60
   61 NQPFGTKSKQ FLAKLVYKKP VQLRILGKDH YQRTLAVVYN AQHENVNIEM VKSGMAWAYP 120
  121 RYNHDPMYLR AQQAAMKARL GLWQDTHPIP PEQWRRQKRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.154902
Match:	1sybA
Description:	TRANSFER OF A BETA-TURN STRUCTURE TO A NEW PROTEIN CONTEXT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.915847726091983	bayes_pls_golite062009
hydrolase activity	0.869534771064178	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.20334286079403	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: