YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15602578, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15602578, gi|....

Description	E-value	Query Range	Subject Range
gi\|52425017, gi\|... - gi\|52425017\|ref\|YP_088154.1\| hypothetical protein MS0962 [Mannheimia succiniciproducens MBEL55E], gi...	135.0	[0..1]	[100..35]
gi\|75430394, gi\|... - gi\|75430394\|ref\|ZP_00732755.1\| conserved hypothetical protein HI1333 [Actinobacillus succinogenes 13...	135.0	[0..3]	[100..1]
gi\|23467071, gi\|... - gi\|23467071\|ref\|ZP_00122656.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly...	131.0	[0..3]	[100..1]
gi\|168825857, gi... - gi\|32029182\|ref\|ZP_00132246.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly...	128.0	[0..3]	[100..1]
gi\|34105105, gi\|... - gi\|34499254\|ref\|NP_903469.1\| hypothetical protein CV_3799 [Chromobacterium violaceum ATCC 12472], gi...	125.0	[0..1]	[99..55]
gi\|56421058, gi\|... - gi\|56421058\|ref\|YP_148376.1\| hypothetical protein GK2523 [Geobacillus kaustophilus HTA426], gi\|56380...	125.0	[0..5]	[98..2]
gi\|27065143, gi\|... - gi\|27065144\|pdb\|1JO0\|B Chain B, Structure Of Hi1333, A Hypothetical Protein From Haemophilus Influen...	125.0	[0..4]	[100..2]
gi\|148718210, gi... - gi\|148826968\|ref\|YP_001291721.1\| 23S rRNA methyltransferase J [Haemophilus influenzae PittGG], gi\|14... gi\|145271884, gi... - gi\|145638912\|ref\|ZP_01794520.1\| transcription elongation factor GreA [Haemophilus influenzae PittII]... gi\|145641636, gi... - gi\|145641636\|ref\|ZP_01797213.1\| 23S rRNA methyltransferase J [Haemophilus influenzae R3021], gi\|1449... gi\|145273683, gi... - gi\|145641636\|ref\|ZP_01797213.1\| 23S rRNA methyltransferase J [Haemophilus influenzae R3021], gi\|1456... gi\|68250002, gi\|... - gi\|68250002\|ref\|YP_249114.1\| RNA-binding protein [Haemophilus influenzae 86-028NP], gi\|68058201\|gb\|A... gi\|145267820, gi... - gi\|145634954\|ref\|ZP_01790661.1\| transcription elongation factor GreA [Haemophilus influenzae PittAA]... Y1333_HAEIN, YD3... - (P71376) Hypothetical UPF0044 protein HI1333, RNA-binding protein HI_1333 OS=Haemophilus influenzae ... gi\|144978261, gi... - gi\|145629418\|ref\|ZP_01785216.1\| transcription elongation factor GreA [Haemophilus influenzae 22.1-21... Y1333_HAEIN - RNA-binding protein HI_1333 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN... gi\|42631767 - gi\|42631767\|ref\|ZP_00157305.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly... gi\|42629492 - gi\|42629492\|ref\|ZP_00155038.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly... gi\|229809633, gi... - gi\|229847492\|ref\|ZP_04467589.1\| 23S rRNA methyltransferase J [Haemophilus influenzae 7P49H1], gi\|229...	125.0	[0..4]	[100..3]
gi\|33152305, gi\|... - gi\|33152305\|ref\|NP_873658.1\| hypothetical protein HD1200 [Haemophilus ducreyi 35000HP], gi\|33148528\|... gi\|8118047 - gi\|8118047\|gb\|AAF72877.1\|AF215936_3 HI1333-like protein [Haemophilus ducreyi]	125.0	[0..1]	[99..1]
gi\|152025515, gi... - gi\|89201417\|ref\|ZP_01180158.1\| Protein of unknown function UPF0044 [Bacillus cereus subsp. cytotoxis...	124.0	[0..5]	[98..2]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITLSTKQK QFLKGLAHHL NPVVMIGNNG LTEGVLAEID NALAHHELIK VKIAGADREV  60
   61 KQLIIDAIVR ETNASAVQTI GHILVLYRPS QEPQIQLPRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1jo0A
Description:	YhbY homologue HI1333
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits