YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12720843, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12720843, gi|....

Description	E-value	Query Range	Subject Range
gi\|68249961, gi\|... - gi\|68249961\|ref\|YP_249073.1\| putative carbonic anhydrase [Haemophilus influenzae 86-028NP], gi\|68058... CAN_HAEIN - Carbonic anhydrase 2 OS=Haemophilus influenzae GN=can PE=1 SV=1 gi\|145638870, gi... - gi\|145638870\|ref\|ZP_01794478.1\| ABC transporter ATPase component [Haemophilus influenzae PittII], gi... gi\|229847450, gi... - gi\|229847450\|ref\|ZP_04467547.1\| asparaginyl-tRNA synthetase [Haemophilus influenzae 7P49H1], gi\|2298... gi\|144983695, gi... - gi\|145641688\|ref\|ZP_01797265.1\| putative carbonic anhydrase [Haemophilus influenzae R3021], gi\|14498... gi\|229845115, gi... - gi\|229845115\|ref\|ZP_04465250.1\| asparaginyl-tRNA synthetase [Haemophilus influenzae 6P18H1], gi\|2298... gi\|145634909, gi... - gi\|145634909\|ref\|ZP_01790616.1\| bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltr... gi\|145636233, gi... - gi\|145636233\|ref\|ZP_01791903.1\| asparaginyl-tRNA synthetase [Haemophilus influenzae PittHH], gi\|1452... gi\|145641688, gi... - gi\|145641688\|ref\|ZP_01797265.1\| putative carbonic anhydrase [Haemophilus influenzae R3021], gi\|14563... gi\|144986072, gi... - gi\|145633226\|ref\|ZP_01788957.1\| asparaginyl-tRNA synthetase [Haemophilus influenzae 3655], gi\|144986... gi\|144978213, gi... - gi\|145629370\|ref\|ZP_01785168.1\| putative carbonic anhydrase [Haemophilus influenzae 22.1-21], gi\|144... gi\|53732796 - gi\|53732796\|ref\|ZP_00155079.2\| COG0288: Carbonic anhydrase [Haemophilus influenzae R2846] gi\|46133535 - gi\|46133535\|ref\|ZP_00157344.2\| COG0288: Carbonic anhydrase [Haemophilus influenzae R2866] CAN_HAEIN - Carbonic anhydrase 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=can PE... gi\|148716211, gi... - gi\|148826051\|ref\|YP_001290804.1\| putative carbonic anhydrase [Haemophilus influenzae PittEE], gi\|148... gi\|148718245, gi... - gi\|148827003\|ref\|YP_001291756.1\| asparaginyl-tRNA synthetase [Haemophilus influenzae PittGG], gi\|148...	290.0	[0..1]	[227..1]
gi\|112823026, gi... - gi\|23466702\|ref\|ZP_00122289.1\| COG0288: Carbonic anhydrase [Haemophilus somnus 129PT], gi\|113460983\|... gi\|170717542, gi... - gi\|32029712\|ref\|ZP_00132695.1\| COG0288: Carbonic anhydrase [Haemophilus somnus 2336], gi\|170717542\|r...	284.0	[0..1]	[225..1]
gi\|28807512 - gi\|28807512\|dbj\|BAC60777.1\| putative carbonic anhydrase [Vibrio parahaemolyticus RIMD 2210633] gi\|28899288, gi\|... - gi\|28899288\|ref\|NP_798893.1\| putative carbonic anhydrase [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|153839857, gi... - gi\|153839857\|ref\|ZP_01992524.1\| carbonic anhydrase [Vibrio parahaemolyticus AQ3810], gi\|149746617\|gb...	283.0	[0..1]	[222..1]
gi\|52425120, gi\|... - gi\|52425120\|ref\|YP_088257.1\| CynT protein [Mannheimia succiniciproducens MBEL55E], gi\|52307172\|gb\|AA...	282.0	[0..1]	[227..1]
gi\|75854184, gi\|... - gi\|75854184\|ref\|ZP_00761894.1\| COG0288: Carbonic anhydrase [Vibrio sp. Ex25], gi\|254230326\|ref\|ZP_04... gi\|91187816, gi\|... - gi\|91228633\|ref\|ZP_01262550.1\| putative carbonic anhydrase [Vibrio alginolyticus 12G01], gi\|91187816...	280.0	[0..1]	[222..1]
gi\|54310267, gi\|... - gi\|54310267\|ref\|YP_131287.1\| putative carbonic anhydrase [Photobacterium profundum SS9], gi\|46914708...	279.0	[0..1]	[217..1]
gi\|32035844 - gi\|32035844\|ref\|ZP_00135664.1\| COG0288: Carbonic anhydrase [Actinobacillus pleuropneumoniae serovar ... gi\|126096998, gi... - gi\|126208206\|ref\|YP_001053431.1\| carbonic anhydrase [Actinobacillus pleuropneumoniae L20], gi\|126096... gi\|190150038, gi... - gi\|190150038\|ref\|YP_001968563.1\| carbonic anhydrase [Actinobacillus pleuropneumoniae serovar 7 str. ...	278.0	[0..1]	[224..1]
gi\|150840592, gi... - gi\|75430511\|ref\|ZP_00732822.1\| Carbonate dehydratase [Actinobacillus succinogenes 130Z], gi\|74276500...	277.0	[0..1]	[224..1]
gi\|255055897, gi... - gi\|255055897\|ref\|ZP_05308122.1\| Carbonate dehydratase [Pectobacterium wasabiae WPP163], gi\|254988268... gi\|50122249, gi\|... - gi\|50122249\|ref\|YP_051416.1\| carbonic anhydrase [Pectobacterium atrosepticum SCRI1043], gi\|49612775\|...	277.0	[0..1]	[213..1]
gi\|90580261, gi\|... - gi\|90580261\|ref\|ZP_01236068.1\| putative Carbonic anhydrase [Vibrio angustum S14], gi\|90438563\|gb\|EAS...	277.0	[0..1]	[228..1]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIEQLFAN NYSWALRMKE ENSSYFKELA DHQTPSYLWI GCSDSRVPAE KLTNLGPGEL  60
   61 FVHRNVANQV IHTDLNCLSV VQYAVEVLNI EHIIICGHTN CGGIKAAMAD QDLGLINNWL 120
  121 LHLRDIWYKH SHLLGNLPPE KRADMLTKIN VAEQVYNLGR SSIIKSAWKN GKKLSLHGWV 180
  181 YDVNDGFLID QGVIATSRES LEISYRNAIA RLLKLNEDEI LKKDQDEEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.69897
Match:	2a8cA
Description:	No description for 2a8cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits