YRC Public Data Repository - Protein Structure Prediction

Protein:	FABA_PASMU
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABA_PASMU.

Description	E-value	Query Range	Subject Range
gi\|32034244 - gi\|32034244\|ref\|ZP_00134455.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABA_ACTP2 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Actinobacillus pleuropneumoniae serotype 5b ... FABA_ACTP7 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Actinobacillus pleuropneumoniae serotype 7 (... FABA_ACTPJ - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Actinobacillus pleuropneumoniae serotype 3 (...	224.0	[0..2]	[177..1]
gi\|53732769 - gi\|53732769\|ref\|ZP_00155045.2\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABA_HAEI8 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Haemophilus influenzae (strain 86-028NP) GN=...	223.0	[0..1]	[177..1]
gi\|145273692, gi... - gi\|145641645\|ref\|ZP_01797222.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae R3021], gi... FABA_HAEIG - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Haemophilus influenzae (strain PittGG) GN=fa... FABA_HAEIN - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Haemophilus influenzae GN=fabA PE=3 SV=1 gi\|145641645 - gi\|145641645\|ref\|ZP_01797222.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae R3021] gi\|145638904, gi... - gi\|145638904\|ref\|ZP_01794512.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae PittII], g... gi\|145636189, gi... - gi\|145636189\|ref\|ZP_01791859.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae PittHH], g... gi\|145633189, gi... - gi\|145633189\|ref\|ZP_01788920.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae 3655], gi\|... gi\|144978250, gi... - gi\|145629407\|ref\|ZP_01785205.1\| 3-hydroxydecanoyl-ACP dehydratase [Haemophilus influenzae 22.1-21], ... gi\|46133509 - gi\|46133509\|ref\|ZP_00157311.2\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABA_HAEIN - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Haemophilus influenzae (strain ATCC 51907 / ...	222.0	[0..1]	[177..1]
FABA_MANSM - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Mannheimia succiniciproducens (strain MBEL55...	221.0	[0..1]	[177..1]
FABA_HAEDU - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Haemophilus ducreyi (strain 35000HP / ATCC 7... FABA_HAEDU - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Haemophilus ducreyi GN=fabA PE=3 SV=1	220.0	[0..2]	[177..1]
FABA_PSEF5 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC ...	220.0	[0..9]	[177..3]
FABA_PSEU2 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas syringae pv. syringae (strain B7... tr\|F3G8R0\|F3G8R0... - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas syringae pv. pisi str. 1704B GN=...	218.0	[0..9]	[177..3]
FABA_PSEP1 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas putida (strain F1 / ATCC 700007)... tr\|E4RE81\|E4RE81... - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas putida (strain BIRD-1) GN=fabA P... tr\|I7AZR4\|I7AZR4... - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas putida (strain DOT-T1E) GN=fabA ... FABA_PSEPK - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas putida (strain KT2440) GN=fabA P...	218.0	[0..9]	[177..3]
gi\|95111632 - gi\|95111632\|emb\|CAK16353.1\| beta-hydroxydecanoyl thioester dehydrase (trans-2-decenoyl-ACP isomerase... FABA_PSEE4 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas entomophila (strain L48) GN=fabA...	218.0	[0..9]	[177..3]
gi\|91974702, gi\|... - gi\|91974702\|ref\|YP_567361.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Rhodopseudomonas ...	218.0	[0..8]	[176..15]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNSCTPNKK SSYSYEDLLA SGRGELFGED GPQLPAPTML MMDRIVEMNE TGGQFNKGYI  60
   61 EAELDIKPDL PFFGCHFIGD PVMPGCLGLD AMWQLVGFYL GWIGGKGKGR ALGVGEVKFT 120
  121 GQILPSAKKV VYRIHMKRVI NRKLVMGMAD GEVEVDGRVI YTATDLKVGL FQDTSAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	2cf2C
Description:	No description for 2cf2C was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits