YRC Public Data Repository - Protein Structure Prediction

Protein:	Y395_PASMU
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y395_PASMU.

Description	E-value	Query Range	Subject Range
Y1349_HAES1 - UPF0319 protein HS_1349 OS=Haemophilus somnus (strain 129Pt) GN=HS_1349 PE=3 SV=1	255.0	[0..1]	[218..1]
Y3630_HAEIE - UPF0319 protein CGSHiEE_03630 OS=Haemophilus influenzae (strain PittEE) GN=CGSHiEE_03630 PE=3 SV=1 gi\|145631467 - gi\|145631467\|ref\|ZP_01787236.1\| hypothetical protein CGSHi22421_02391 [Haemophilus influenzae 22.4-2... Y1681_HAEIN - UPF0319 protein HI_1681 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_... Y1681_HAEIN, YG8... - (P44290) UPF0319 protein HI1681 precursor, UPF0319 protein HI_1681 OS=Haemophilus influenzae GN=HI_1... gi\|144982897 - gi\|144982897\|gb\|EDJ90410.1\| hypothetical protein CGSHi22421_02391 [Haemophilus influenzae R3021]	245.0	[0..1]	[218..1]
gi\|145629228, gi... - gi\|145629228\|ref\|ZP_01785027.1\| hypothetical protein CGSHi22121_10510 [Haemophilus influenzae 22.1-2... gi\|46133599 - gi\|46133599\|ref\|ZP_00157447.2\| COG3110: Uncharacterized protein conserved in bacteria [Haemophilus i... gi\|145641067, gi... - gi\|145641067\|ref\|ZP_01796648.1\| hypothetical protein CGSHiR3021_08356 [Haemophilus influenzae R3021]... gi\|145641067 - gi\|145641067\|ref\|ZP_01796648.1\| hypothetical protein CGSHiR3021_08356 [Haemophilus influenzae R3021] gi\|145639163, gi... - gi\|145639163\|ref\|ZP_01794770.1\| hypothetical protein CGSHiII_03974 [Haemophilus influenzae PittII], ...	244.0	[0..1]	[218..1]
gi\|53732528 - gi\|53732528\|ref\|ZP_00154582.2\| COG3110: Uncharacterized protein conserved in bacteria [Haemophilus i...	244.0	[0..1]	[218..1]
Y1987_HAEI8 - UPF0319 protein NTHI1987 OS=Haemophilus influenzae (strain 86-028NP) GN=NTHI1987 PE=3 SV=1	243.0	[0..1]	[218..1]
YCCT_SALCH - UPF0319 protein yccT OS=Salmonella choleraesuis GN=yccT PE=3 SV=1 YCCT_SALPC - UPF0319 protein YccT OS=Salmonella paratyphi C (strain RKS4594) GN=yccT PE=3 SV=1 gi\|204320308, gi... - gi\|204930849\|ref\|ZP_03221722.1\| protein YccT [Salmonella enterica subsp. enterica serovar Javiana st... YCCT_SALNS - UPF0319 protein YccT OS=Salmonella newport (strain SL254) GN=yccT PE=3 SV=1 YCCT_SALCH - UPF0319 protein YccT OS=Salmonella choleraesuis (strain SC-B67) GN=yccT PE=3 SV=1 YCCT_SALCH - UPF0319 protein yccT OS=Salmonella choleraesuis GN=yccT PE=3 SV=1	241.0	[0..1]	[217..1]
YCCT_SALTY - UPF0319 protein yccT OS=Salmonella typhimurium GN=yccT PE=3 SV=1 YCCT_SALTI - UPF0319 protein yccT OS=Salmonella typhi GN=yccT PE=3 SV=1 YCCT_SALTI - UPF0319 protein YccT OS=Salmonella typhi GN=yccT PE=3 SV=1 YCCT_SALTY - UPF0319 protein yccT OS=Salmonella typhimurium GN=yccT PE=3 SV=1 gi\|16759958 - gi\|16759958\|ref\|NP_455575.1\| hypothetical protein STY1099 [Salmonella enterica subsp. enterica serov... YCCT_SALTY - UPF0319 protein YccT OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yccT PE=3 SV... gi\|29142270, gi\|... - gi\|29142270\|ref\|NP_805612.1\| hypothetical protein t1843 [Salmonella enterica subsp. enterica serovar... gi\|167552666, gi... - gi\|205322743\|gb\|EDZ10582.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YCCT_SALPB - UPF0319 protein yccT OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yccT PE=3 SV=1 gi\|213622022 - gi\|213622022\|ref\|ZP_03374805.1\| hypothetical protein SentesTyp_32661 [Salmonella enterica subsp. ent... gi\|213582517 - gi\|213582517\|ref\|ZP_03364343.1\| hypothetical protein SentesTyph_15483 [Salmonella enterica subsp. en... gi\|213425896 - gi\|213425896\|ref\|ZP_03358646.1\| hypothetical protein SentesTyphi_09729 [Salmonella enterica subsp. e... gi\|213160862 - gi\|213160862\|ref\|ZP_03346572.1\| hypothetical protein Salmoneentericaenterica_12748 [Salmonella enter... gi\|214001662 - gi\|214001662\|ref\|ZP_03412397.1\| hypothetical protein Salmonellentericaenterica_14879 [Salmonella ent... gi\|213857355 - gi\|213857355\|ref\|ZP_03384326.1\| hypothetical protein SentesT_19465 [Salmonella enterica subsp. enter... gi\|197265344, gi... - gi\|197265344\|ref\|ZP_03165418.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|168821816, gi... - gi\|205341749\|gb\|EDZ28513.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168264162, gi... - gi\|205347344\|gb\|EDZ33975.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205327289, gi... - gi\|205327289\|gb\|EDZ14053.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213028754 - gi\|213028754\|ref\|ZP_03343201.1\| hypothetical protein Salmonelentericaenterica_43633 [Salmonella ente... YCCT_SALEP - UPF0319 protein YccT OS=Salmonella enteritidis PT4 (strain P125109) GN=yccT PE=3 SV=1 YCCT_SALG2 - UPF0319 protein YccT OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yccT PE=3 SV=1 gi\|200390845, gi... - gi\|200390845\|ref\|ZP_03217456.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YCCT_SALPB - UPF0319 protein YccT OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yccT PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yccT] [protein=hypothetical protein] [protein_id=YP_005236811.1] [location=complement(1127421....	240.0	[0..1]	[217..1]
gi\|37201651, gi\|... - gi\|37677106\|ref\|NP_937502.1\| hypothetical protein VVA1446 [Vibrio vulnificus YJ016], gi\|37201651\|dbj...	238.0	[0..1]	[216..19]
gi\|153839450, gi... - gi\|153839450\|ref\|ZP_01992117.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|... Y5584_VIBPA, YJI... - (Q87FU4) Hypothetical UPF0319 protein VPA1584 precursor, UPF0319 protein VPA1584 OS=Vibrio parahaemo... Y5584_VIBPA - UPF0319 protein VPA1584 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VPA1584 P...	237.0	[0..1]	[217..1]
Y1002_ACTSZ - UPF0319 protein Asuc_1002 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=Asuc_1002 PE=...	237.0	[0..1]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFRFAALAS VALLTSTVSV AGVVTSSSNI DFLAIDGQKP SKSLLKEKRS FNVSDTLPHQ  60
   61 VVVRVAEIIR TGSDRSLYES DPIVVTFQGT TDDIIISAPR LETERDANAF KKSPKITVKT 120
  121 VSGVEIATKQ EYLKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.593	N/A	N/A	b.1.18	E set domains
View	Download	0.333	N/A	N/A	b.7.1	C2 domain (Calcium/lipid-binding domain, CaLB)
View	Download	0.321	N/A	N/A	b.1.2	Fibronectin type III
View	Download	0.297	N/A	N/A	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.259	N/A	N/A	b.1.5	Transglutaminase, two C-terminal domains

Predicted Domain #2

Region A:
Residues: [136-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGFLPGINLI ENLSEYNASG APAAVARLAS TTMPAAIPGF GKAQKGKITV QGENVAEQML  60
   61 QYWYQQADKE TQQRFLSWAK GQK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.507	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.496	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.446	N/A	N/A	a.61.1	Retroviral matrix proteins
View	Download	0.436	N/A	N/A	d.8.1	Urease, gamma-subunit
View	Download	0.391	N/A	N/A	a.61.1	Retroviral matrix proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits