YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15602225, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15602225, gi|....

Description	E-value	Query Range	Subject Range
gi\|145271112, gi... - gi\|145639744\|ref\|ZP_01795346.1\| penicillin-insensitive murein endopeptidase [Haemophilus influenzae ... gi\|145637361, gi... - gi\|145637361\|ref\|ZP_01793021.1\| penicillin-insensitive murein endopeptidase [Haemophilus influenzae ... gi\|144978974, gi... - gi\|145628504\|ref\|ZP_01784304.1\| penicillin-insensitive murein endopeptidase [Haemophilus influenzae ... gi\|53733133 - gi\|53733133\|ref\|ZP_00156039.2\| COG3770: Murein endopeptidase [Haemophilus influenzae R2866]	504.0	[0..1]	[286..1]
gi\|46128949 - gi\|46128949\|ref\|ZP_00154683.2\| COG3770: Murein endopeptidase [Haemophilus influenzae R2846]	503.0	[0..1]	[286..1]
gi\|48867693, gi\|... - gi\|68248802\|ref\|YP_247914.1\| penicillin-insensitive murein endopeptidase [Haemophilus influenzae 86-...	503.0	[0..1]	[286..1]
MEPA_HAEIN - Penicillin-insensitive murein endopeptidase OS=Haemophilus influenzae GN=mepA PE=3 SV=1 MEPA_HAEIN - Penicillin-insensitive murein endopeptidase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121...	500.0	[0..1]	[286..1]
gi\|112823390, gi... - gi\|113461347\|ref\|YP_719416.1\| penicillin-insensitive murein endopeptidase [Haemophilus somnus 129PT]...	479.0	[0..5]	[286..1]
gi\|46156761, gi\|... - gi\|46156761\|ref\|ZP_00132195.2\| COG3770: Murein endopeptidase [Haemophilus somnus 2336], gi\|170718495...	476.0	[0..5]	[286..1]
gi\|52306974, gi\|... - gi\|52424922\|ref\|YP_088059.1\| penicillin-insensitive murein endopeptidase [Mannheimia succiniciproduc...	457.0	[0..2]	[284..1]
gi\|150840364, gi... - gi\|75429470\|ref\|ZP_00732271.1\| hypothetical protein AsucDRAFT_0884 [Actinobacillus succinogenes 130Z...	450.0	[0..2]	[286..1]
gi\|33152357, gi\|... - gi\|33152357\|ref\|NP_873710.1\| penicillin-insensitive murein endopeptidase [Haemophilus ducreyi 35000H...	440.0	[0..15]	[278..9]
gi\|46143240 - gi\|46143240\|ref\|ZP_00135621.2\| COG3770: Murein endopeptidase [Actinobacillus pleuropneumoniae serova...	439.0	[0..24]	[278..4]

Back

Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKKSVNIAV MLTALFSLLC SLAYASPQEW QKIKRPIPGS PEPIGSYSNG CIIGAQALPY  60
   61 KGDGYQVIRK NRNRYYGHPD MIDYLQRLGK KVKAAGLPTM LIGDIAMPGG GRFLTGHASH 120
  121 QMGLDADIWL RMGTMSDQDA LNSDGKGLLV VDRKAQRVDE RVWNNNHALL IKLAAEDPKV 180
  181 TRIFVNPAIK LKLCQSAGNQ RAWLHKVRPW FGHDSHFHVR LTCPKGASYC ENQAPVPAGD 240
  241 GCGSELYSWF EPPKPTKTPS EPKAVPQAPP LCQQILNAPN RSEWLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	117.0
Match:	1tzpA
Description:	MEPA, inactive form without ZN in P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.579809417316389	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: