YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12720314, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12720314, gi|....

Description	E-value	Query Range	Subject Range
gi\|52424565, gi\|... - gi\|52424565\|ref\|YP_087702.1\| PlsC protein [Mannheimia succiniciproducens MBEL55E], gi\|52306617\|gb\|AA...	218.0	[0..1]	[241..1]
gi\|27362190, gi\|... - gi\|27365990\|ref\|NP_761518.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio vulnificus CMCP6...	217.0	[0..1]	[240..1]
gi\|113460644, gi... - gi\|23468006\|ref\|ZP_00123580.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Haemophilus ...	215.0	[0..1]	[240..1]
gi\|59479110, gi\|... - gi\|59711009\|ref\|YP_203785.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio fischeri ES114],...	214.0	[0..1]	[241..12]
gi\|46156593, gi\|... - gi\|46156593\|ref\|ZP_00132415.2\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Haemophilus ...	214.0	[0..1]	[240..1]
PLSC_HAEIN - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Haemophilus influenzae GN=plsC PE=3 SV=1 PLSC_HAEIN - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11... gi\|229812317, gi... - gi\|229844603\|ref\|ZP_04464742.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Haemophilus influenz... gi\|68249333, gi\|... - gi\|68249333\|ref\|YP_248445.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Haemophilus influenzae ...	212.0	[0..1]	[237..1]
gi\|144980162, gi... - gi\|145628387\|ref\|ZP_01784188.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Haemophilus influenz... gi\|46133105 - gi\|46133105\|ref\|ZP_00203072.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Haemophilus ... gi\|145638471, gi... - gi\|145638471\|ref\|ZP_01794081.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Haemophilus influenz...	211.0	[0..1]	[237..1]
gi\|46128878 - gi\|46128878\|ref\|ZP_00154507.2\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Haemophilus ...	211.0	[0..1]	[237..1]
gi\|84377500, gi\|... - gi\|84387655\|ref\|ZP_00990672.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio splendidus 12B...	210.0	[0..1]	[240..1]
gi\|116219659, gi... - gi\|75819123\|ref\|ZP_00749220.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole...	208.0	[0..1]	[241..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLLRTIVI VFCCLLICVL GSIYSFIRFR NPSNVGIMAR WFGRLHPLFG LTVEHRFPKN  60
   61 VDKFGRCIYI GNHQNNYDMV TISYMVQPRT VSVGKKSLIW IPFFGLLYWV TGNILIDREN 120
  121 RTKAHGTMNE VARRIHDDDL SVWMFPEGTR SRGRGLLPFK TGAFYAAIAA GVPIVPVVCS 180
  181 TTQGKIDLNR WDNGKVICEM LEPIDVSAYD KENVRELAAH CHQLMAQRIA ELDAEIAQQS 240
  241 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	1iuqA
Description:	The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits