YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|54287600, gi|...
Organism: Oryza sativa Japonica Group
Length: 378 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54287600, gi|....

Description E-value Query
Range
Subject
Range
RER4_ARATH - Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana GN=RER4 PE=2 SV=1
395.0 [0..91] [378..96]

Back

Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFPSPNSLS AASHPTSSSS SFHLHLQLQQ PVPHLPFPRS LPLNLPVLRL ARPLLPPAPL  60
   61 ASSGSGGIGI GGGGDDDEGR DNAGGGDGGD DDASV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [96-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRREALFVLA QLGRKLESLP ADLAAAIEGG RVPGEIVQRF ADLEKSGLFR WLLQFGGFKE  60
   61 RLLA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [160-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDLFLAKVAM ECGVGIFTKT AAEYERRREN FVKELDFVIA DVVMAIVADF MLVWLPAPTV  60
   61 SLQPPLAVNA GSIAKFFHNC PDNAFQVALA GTSYSLLQRV GAIMRNGAKL FAVGTSASLI 120
  121 GTGVTNALIK ARKAVSKDFE GESEDIPIVS TSVAYGVYMA VSSNLRYQIL AGVIEQRMLE 180
  181 PLLHHHKLVL SALCFAVRTG NTFLGSLLWV DYAKWIGIQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle