| Protein: | gi|54287453 |
| Organism: | Oryza sativa Japonica Group |
| Length: | 1086 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54287453.
| Description | E-value | Query Range |
Subject Range |
|
|
700.0 | [0..1] | [1086..1] |
|
|
437.0 | [0..10] | [891..1] |
|
|
395.0 | [0..10] | [816..1] |
|
Region A: Residues: [1-117] |
1 11 21 31 41 51
| | | | | |
1 MGGKYLWKPL LRFSGESYRF SPLSRSCAQD RRGDGVRPRQ IRRLRAGEAG SRAVSGGNRA 60
61 VRDGNRLGRR ARGNPSVLKV FARLGAVTVR FCMVTVGFVI YETIYVCACT YNYVVLL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [118-219] |
1 11 21 31 41 51
| | | | | |
1 HNGRVEMSDS RDPVWEHGEN IPPGWRCKYC HTKRGGGGAT RLKQHLAARG KGVTYCNSVP 60
61 PDVREFFCRE LDRIKDAGDQ RKSDSGRRVE AARVNYYDLT GD
|
| Detection Method: | |
| Confidence: | 18.886057 |
| Match: | PF07567.4 |
| Description: | No description for PF07567.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [220-311] |
1 11 21 31 41 51
| | | | | |
1 ADEEEQMEAA IAASRQDENF RRDVEERGGT YEHGGGSGSA QPEARKGRSN PITNMLRRAT 60
61 SHRESPAVRD YNLASAKAPV QPRIDTGFFT KK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [312-805] |
1 11 21 31 41 51
| | | | | |
1 GKQARQAIGE SWARFFFTAG IPGRNADNPY FVSAVRETQK WGESVPSPTG NEIDGKYLDS 60
61 TEKDVKKQFD RFKKDWDEYG VTIMCDSWTG PTSMSVINFL IYCNGIMFFH KSIDATGQSQ 120
121 DANFVLKEIR KVVREIGSEH VVQIITDNGS NYKKACRLLR QEYKTIVWQP CVAHTVNLML 180
181 KEVGKMPDHE MVIESARKIC RWLYNHNKLH AMMVLAIGGE LVKWNATRFG TNYMFLQSFL 240
241 RKRDLFMQWM ASSVFMQSKF SGTLEGRYAH ACLSSLSWWE NLEAVVNSVQ PMYSFLRFAD 300
301 EDKNPNLSEV LLRYQLLKME YDTLFANQRD KFEAYMEIVN RRMHDLTNET LINAAAALNP 360
361 RTHYAYSPSA TVFQDLRQAF EWMTDIDTAA AALLEVEMYR RKTGEFGRAL ARRMAIDGKT 420
421 SPAQWWSMFA SDTPNLKKLA LRLVGQCCSS SGCERNWSTF AFVHTKVRNR LTHKKLNKLV 480
481 YVNYNLRLRI QQAN
|
| Detection Method: | |
| Confidence: | 51.69897 |
| Match: | 2bw3A |
| Description: | Three-dimensional structure of the Hermes DNA transposase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [806-934] |
1 11 21 31 41 51
| | | | | |
1 AQIRVEDDDP LQRLADLSFY ETNNHISAWM DNARSNACPE LDEDSAESDA PLPSQLVSDL 60
61 VNLDDLRRTT GASSIAEWAD TNVGDTHIGK RKTRKPPKAR PSKKVKGKGP RSTSVDSDEE 120
121 TQGSPEYQE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [935-1086] |
1 11 21 31 41 51
| | | | | |
1 SNDSSSRTET DDGDDDGQGG QGTTNVPPRG HTQQSDHHSP VQFTGEGDFT HATQDQDHGA 60
61 PSSQRTTIAP GVRQQQQFSD IQQDSSSSFS ASSFESGYPT YVYNRPQASD YPATTWVYEW 120
121 QEPQCSNISR LPSSYRGYRT KPCGYRVHTV DF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
