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View Structure Prediction Details

Protein: gi|32815911, gi|...
Organism: Arabidopsis thaliana
Length: 139 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|32815911, gi|....

Description E-value Query
Range
Subject
Range
gi|76653291 - gi|76653291|ref|XP_584162.2| PREDICTED: similar to Calcitonin gene-related peptide-receptor componen...
164.0 [0..1] [138..66]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIVKANAGA LTNFEVLDFL NSRGASKDTT RVIAPIARSE YKVYDYLVET AASTQTRESI  60
   61 NKFADKCKDF KLAKAEILNI INLRPSSIVE LLPIIENLDD REIDTDGILE LVKDLLPPLP 120
  121 TTASPKDDDE EETENGEQS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 2c35A
Description: Subunits Rpb4 and Rpb7 of human RNA polymerase II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.649848167124196 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle