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View Structure Prediction Details

Protein: DRP2B_ARATH
Organism: Arabidopsis thaliana
Length: 920 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for DRP2B_ARATH.

Predicted Domain #1
Region A:
Residues: [1-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG  60
   61 HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ QVSASALRHS LQDRLSKGAS 120
  121 GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI 180
  181 SSSRALKIAK EYDPESTRTV GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI 240
  241 GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL 300
  301 RLPNILTGLQ GKSQIVQDEL ARLGEQL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.0
Match: 2akaB
Description: Structure of the nucleotide-free myosin II motor domain from Dictyostelium discoideum fused to the GTPase domain of dynamin 1 from Rattus norvegicus
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [328-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSSAEGTRAI ALELCREFED KFLLHLAGGE GSGWKVVASF EGNFPNRIKK LPLDRHFDLN  60
   61 NVKRIVLEAD GYQPYLISPE KGLRSLIKTV LELAKDPARL CVDEVHRVLV DIVSASANAT 120
  121 PGLGRYPPFK REVVAIASAA LDGFKNEAKK MVVALVDMER AFVPPQHFIR LVQRRMERQR 180
  181 REEELKGRSS K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [519-709]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGQDAEQSLL NRATSPQPDG PSSTGGSLKS LRDKLMPQDK DKDKEKETPE VSGLKTAGPE  60
   61 GEITAGYLMK KSAKTNGWSR RWFVLNEKTG KLGYTKKQEE RNFRGTVTLE ECSIEEISDD 120
  121 EGEKSKSSKD KKSNGPDSKG PGLVFKITCR VPYKTVLKAH NALVLKAESM VDKNEWINKL 180
  181 QKVIQARGGQ V

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 16.958607
Match: PF00169.21
Description: No description for PF00169.21 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [710-824]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSASMRQSLS EGSLDKMVRK PVDPEEELRW MSQEVRGYVE AVLNSLAANV PKAVVLCQVE  60
   61 KSKEDMLNQL YSSISAIGNE RIESLIQEDQ NVKRRRDRYQ KQSSLLSKLT RQLSI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.769551
Match: PF02212.10
Description: No description for PF02212.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [825-920]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDNRAAAASS WSDNSGTESS PRTNGGSSGE DWMNAFNAAA SGPDSLKRYG SGGHSRRYSD  60
   61 PAQNGEDSSG SGGSSRRTTP NRLPPAPPQS GSSYRY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle