YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23466337, gi\|...
Organism:	Bifidobacterium longum NCC2705
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23466337, gi|....

Description	E-value	Query Range	Subject Range
gi\|25027480, gi\|... - gi\|25027480\|ref\|NP_737534.1\| hypothetical protein CE0924 [Corynebacterium efficiens YS-314], gi\|2349...	7.0E-36	[25..226]	[1..202]
gi\|68202954, gi\|... - gi\|68229389\|ref\|ZP_00568584.1\| DedA [Frankia sp. EAN1pec], gi\|68202954\|gb\|EAN17131.1\| DedA [Frankia ...	3.0E-34	[34..230]	[21..216]
gi\|114537537, gi... - gi\|114706987\|ref\|ZP_01439886.1\| hypothetical protein FP2506_03009 [Fulvimarina pelagi HTCC2506], gi\|...	8.0E-34	[25..216]	[22..216]
gi\|4808350, gi\|2... - gi\|4808350\|emb\|CAB42764.1\| possible membrane protein [Streptomyces coelicolor A3(2)], gi\|21221838\|re... gi\|7481018 - pir\|\|T36337 probable membrane protein - Streptomyces coelicolor	2.0E-33	[28..226]	[9..207]
gi\|29608316, gi\|... - gi\|29831202\|ref\|NP_825836.1\| hypothetical protein SAV_4659 [Streptomyces avermitilis MA-4680], gi\|29...	4.0E-33	[33..227]	[16..209]
gi\|67547666, gi\|... - gi\|67547666\|ref\|ZP_00425567.1\| DedA [Burkholderia vietnamiensis G4], gi\|67531101\|gb\|EAM27925.1\| DedA...	4.0E-33	[17..232]	[757..975]
gi\|113902835, gi... - gi\|145594624\|ref\|YP_001158921.1\| hypothetical protein Strop_2092 [Salinispora tropica CNB-440], gi\|1...	5.0E-33	[8..222]	[7..221]
gi\|83840712, gi\|... - gi\|83954986\|ref\|ZP_00963664.1\| DedA [Sulfitobacter sp. NAS-14.1], gi\|83840712\|gb\|EAP79884.1\| DedA [S...	8.0E-33	[26..218]	[1..196]
gi\|39998067, gi\|... - gi\|39998067\|ref\|NP_954018.1\| DedA family protein [Geobacter sulfurreducens PCA], gi\|39985012\|gb\|AAR3...	1.0E-32	[23..221]	[1..198]
gi\|83943603, gi\|... - gi\|83943603\|ref\|ZP_00956062.1\| DedA [Sulfitobacter sp. EE-36], gi\|83845835\|gb\|EAP83713.1\| DedA [Sulf...	1.0E-32	[26..218]	[1..196]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATILATD PTPICTTTEP GLIGTITDWL IMLMETIGGI GVALAIALES IFPPIPSEVI  60
   61 LPLSGFTAAR GTLSLPGAII WATIGSVLGA WTLYGISRWV GLHRINLAAD KIPGVSRKDV 120
  121 SKANDWFTKY GTWSVLIGRV IPVVRSLISI PAGFNRMNFL HFTGWTLLGS AVWNTILVSA 180
  181 GYLLGDQWCS IQGALGVFED VVIAAVIVVI VWFVVRKVRT VIRNRKSADG NE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	9.958607
Match:	PF09335.2
Description:	No description for PF09335.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits