YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23465936, gi\|...
Organism:	Bifidobacterium longum NCC2705
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23465936, gi|....

Description	E-value	Query Range	Subject Range
gi\|25027672, gi\|... - gi\|25027672\|ref\|NP_737726.1\| quinolinate synthetase [Corynebacterium efficiens YS-314], gi\|23492954\|...	0.0	[6..426]	[9..434]
gi\|41325294, gi\|... - gi\|62389958\|ref\|YP_225360.1\| quinolinate synthetase [Corynebacterium glutamicum ATCC 13032], gi\|4132...	0.0	[5..426]	[4..416]
gi\|88815554, gi\|... - gi\|88855026\|ref\|ZP_01129691.1\| quinolinate synthetase [marine actinobacterium PHSC20C1], gi\|88815554...	0.0	[4..426]	[1..422]
gi\|152967500, gi... - gi\|69286589\|ref\|ZP_00617538.1\| Quinolinate synthetase A [Kineococcus radiotolerans SRS30216], gi\|679...	0.0	[18..426]	[17..430]
NADA_CORGL - Quinolinate synthase A OS=Corynebacterium glutamicum GN=nadA PE=3 SV=1 NADA_CORGL - Quinolinate synthase A OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG...	0.0	[37..426]	[1..382]
gi\|62423082 - gi\|62423082\|ref\|ZP_00378254.1\| COG0379: Quinolinate synthase [Brevibacterium linens BL2]	0.0	[2..426]	[4..426]
gi\|116611215, gi... - gi\|66965372\|ref\|ZP_00412939.1\| Quinolinate synthetase A [Arthrobacter sp. FB24], gi\|66868821\|gb\|EAL9...	0.0	[23..426]	[34..441]
gi\|50951729, gi\|... - gi\|50955247\|ref\|YP_062535.1\| quinolinate synthetase [Leifsonia xyli subsp. xyli str. CTCB07], gi\|509...	0.0	[1..426]	[1..425]
NADA_BACCZ - Quinolinate synthase A OS=Bacillus cereus (strain ZK / E33L) GN=nadA PE=3 SV=1	0.0	[51..423]	[4..366]
gi\|254751331 - gi\|254751331\|ref\|ZP_05203368.1\| quinolinate synthetase [Bacillus anthracis str. Vollum] gi\|254741570 - gi\|254741570\|ref\|ZP_05199257.1\| quinolinate synthetase [Bacillus anthracis str. Kruger B] gi\|254736532 - gi\|254736532\|ref\|ZP_05194238.1\| quinolinate synthetase [Bacillus anthracis str. Western North Americ... gi\|254724644 - gi\|254724644\|ref\|ZP_05186427.1\| quinolinate synthetase [Bacillus anthracis str. A1055] gi\|254757663 - gi\|254757663\|ref\|ZP_05209690.1\| quinolinate synthetase [Bacillus anthracis str. Australia 94] NADA_BACAN - Quinolinate synthase A OS=Bacillus anthracis GN=nadA PE=3 SV=1 gi\|49187320, gi\|... - gi\|49187320\|ref\|YP_030572.1\| quinolinate synthetase [Bacillus anthracis str. Sterne], gi\|49181247\|gb... gi\|47505106, gi\|... - gi\|47529958\|ref\|YP_021307.1\| quinolinate synthetase [Bacillus anthracis str. 'Ames Ancestor'], gi\|47... gi\|190561985, gi... - gi\|190566994\|ref\|ZP_03019910.1\| quinolinate synthetase complex, subunit A [Bacillus anthracis Tsiank... gi\|172081059, gi... - gi\|177654004\|ref\|ZP_02936045.1\| quinolinate synthetase complex, subunit A [Bacillus anthracis str. A... gi\|170709108, gi... - gi\|170709108\|ref\|ZP_02899535.1\| quinolinate synthetase complex, subunit A [Bacillus anthracis str. A... gi\|170688665, gi... - gi\|170688665\|ref\|ZP_02879870.1\| quinolinate synthetase complex, subunit A [Bacillus anthracis str. A... gi\|167640741, gi... - gi\|167640741\|ref\|ZP_02399001.1\| quinolinate synthetase complex, subunit A [Bacillus anthracis str. A... gi\|30259156, gi\|... - gi\|30264498\|ref\|NP_846875.1\| quinolinate synthetase [Bacillus anthracis str. Ames], gi\|30259156\|gb\|A... gi\|167636201, gi... - gi\|167636201\|ref\|ZP_02394505.1\| quinolinate synthetase complex, subunit A [Bacillus anthracis str. A... gi\|254684185 - gi\|254684185\|ref\|ZP_05148045.1\| quinolinate synthetase [Bacillus anthracis str. CNEVA-9066] gi\|165871966, gi... - gi\|165871966\|ref\|ZP_02216607.1\| quinolinate synthetase complex, subunit A [Bacillus anthracis str. A... NADA_BACAA - Quinolinate synthase A OS=Bacillus anthracis (strain A0248) GN=nadA PE=3 SV=1 NADA_BACAC - Quinolinate synthase A OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=nadA PE=3 SV=1	0.0	[51..423]	[4..366]

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Predicted Domain #1

Region A:
Residues: [1-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALSTAPSV DEIIAKLGAQ STCDAGLTQD PWHFDTTTPS YGPGASMLDR LPANAPRQQV  60
   61 LPDEYRKASD EELQQRITDA KQRLGSKLLI LGHFYQRDEI IKHADFVGDS FQLAKNATER 120
  121 PDADHIVFCG VHFMAETADI LSTPEQSVTL PNLSAGCSMA DMANIDQVQE CWDQLGEICG 180
  181 TQPDSDGLQQ IIPVTYMNSS AALKAFCGRN GGIVCTSSNA HAVLEWAFAR GKRVLFFPDQ 240
  241 HLGRNTARAM GIPLSEMPLW DPFKAQGGAA DPADYARAKM ILWKGFCSVH QRFTVEQVER 300
  301 ARKAYPGVKV IVHPECSMQV VDAADGTGST AYIVKEIANA PAGSAIAVGT EINLVNRLAA 360
  361 QYPDKTVFCL DPVVCPCSTM YRIHPAYLAW ALENLEAGNV VNRITVDEDT AREAKVALER 420
  421 MLRVHP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	109.0
Match:	1wzuA
Description:	Crystal structure of quinolinate synthase (nadA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
quinolinate synthetase A activity	13.6613396373416	bayes_pls_golite062009
catalytic activity	1.94308403509017	bayes_pls_golite062009
binding	0.5033130924527	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: